Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2009 ATGGTGAAAATCTCGGTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAAACCAGAAGCGACGCAGGGAAGAGGAGGAGAAAGAAGACGAACAACAACCGCAACGAAGCTTTGAAATCGAAGACTCTTCAATTGGAACGCAAGAGCACGAAGACCATCCTGCTCCACCCGATGATGGATCCAATGCTAACACAAACGGGTCTGCAACCACTGGCAGGGATAGGTCCATTCCTATCTTCGTTTCCGACCCTGATGTCTTCGATTGCTGCATTTGCTATGAACCCTTGAATGCCCCTGTCTTCCAGTGTGAGAATGGACATATTGCTTGCTCTAGTTGCTGTGTCAGACTCAGGAACAAGTGTCCCATGTGCTTCATGCCTATTGGCTATAACCGTTGCCGAGCTATTGAGAAGGTGCTGGACTCTATTAAAATGTCATGCCCGAATGTAAATTATGGCTGCAAAGAGACATTTAGTTACAGCAGGAAAAACGACCATGAGAAGGAATGCATCTATCTACCGTGTTTATGCCCACATATAGGTTGTGATTTTGTTGCCTCATCCAAGGAGTTATTCCTCCACTTCAGCCATAGACATGTAGGCTCTGGAACACAGTTtacatatgataaatttttcaCTGTCATCTTAAGTACTGACCAAAAAACAACTGTTCTGCAAGAGAAAAATGATGCTAATCTGTTTGTTGTTCACAATAACCATGAGCATCTGGGGAATATAGTCCGCATTAGTTGCATTGGCCCCAAGTCCATGGCAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATATTGCAATCTTTTACCAAGATCGTTCAAGGCCAAATTGCTGATGCTCCTTCAAATGCATTCCTTTTGATTCCGTCTGGTTTTTTTGGCTCTCCACAACTGAAACTCGATATTCGCATAAAGTCACAACATTAA 957 0.4357 MVKISVGGYDDGEGPSNRNQKRRREEEEKEDEQQPQRSFEIEDSSIGTQEHEDHPAPPDDGSNANTNGSATTGRDRSIPIFVSDPDVFDCCICYEPLNAPVFQCENGHIACSSCCVRLRNKCPMCFMPIGYNRCRAIEKVLDSIKMSCPNVNYGCKETFSYSRKNDHEKECIYLPCLCPHIGCDFVASSKELFLHFSHRHVGSGTQFTYDKFFTVILSTDQKTTVLQEKNDANLFVVHNNHEHLGNIVRISCIGPKSMAEFQYEVLARFRGSTLILQSFTKIVQGQIADAPSNAFLLIPSGFFGSPQLKLDIRIKSQH 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2009 318 MobiDBLite consensus disorder prediction 60 76 - -
Ssu5g2009 318 SUPERFAMILY TRAF domain-like 143 314 - -
Ssu5g2009 318 ProSiteProfiles Zinc finger RING-type profile. 90 125 IPR001841 -
Ssu5g2009 318 CDD RING-HC_SIAHs 88 125 - -
Ssu5g2009 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 316 - -
Ssu5g2009 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 196 IPR013083 -
Ssu5g2009 318 MobiDBLite consensus disorder prediction 15 58 - -
Ssu5g2009 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 316 IPR044286 -
Ssu5g2009 318 SUPERFAMILY RING/U-box 89 132 - -
Ssu5g2009 318 Pfam Seven in absentia protein family 133 282 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu5g2009 318 MobiDBLite consensus disorder prediction 1 77 - -
Ssu5g2009 318 ProSiteProfiles Zinc finger SIAH-type profile. 143 201 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2009 Ssu-Chr5 57966411 57968019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2009 41 200 C3H Transcription Factor Family AT2G41980 32.099 1.40e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2009 K04506 - gmx:100778869 550.051