Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2008 atggcGTCAGTGTCCGGAAACATGAAGGGTTTCTACAGACAGAGGAAAAACACGGTCACCAAgaaatcttccaagaaatctccTACTCACGCCGCGACTTTGGGCTCGAATGCGGCCCAAACACCTGCCCTCATCTCCCACGGCGGAAACCCTGACCTGGAAGATGAATACAAGGAGAGCGAGGTGATGTTGCGGCAATTCGACTTGAACATGGCATATGGGCCTTGCCTCGGAATGACGCGGCTCGCACGCTGGGAGCGTGCTCAGAGGCTCGGTTTGAACCCTCCGCGGGAAATCGAGAGCCTCTTAAAGAGTGGAAAAGTTCAGACAGAGTCCCTGTGGGATGGTCGCATCTAG 357 0.5154 MASVSGNMKGFYRQRKNTVTKKSSKKSPTHAATLGSNAAQTPALISHGGNPDLEDEYKESEVMLRQFDLNMAYGPCLGMTRLARWERAQRLGLNPPREIESLLKSGKVQTESLWDGRI 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2008 118 Pfam DNA polymerase delta, subunit 4 55 108 IPR007218 GO:0000731|GO:0006260
Ssu5g2008 118 PANTHER DNA POLYMERASE DELTA SUBUNIT 4 1 118 IPR007218 GO:0000731|GO:0006260
Ssu5g2008 118 MobiDBLite consensus disorder prediction 1 57 - -
Ssu5g2008 118 PANTHER DNA POLYMERASE DELTA SUBUNIT 4 1 118 - -
Ssu5g2008 118 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2008 Ssu-Chr5 57930319 57930765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2008 1 118 Core DNA Replication Machinery Family AT1G09815 58.400 2.68e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2008 K03505 - gmx:100778329 188.734