Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2006 ATGATCATGGCTACCATTTCTTCAACTTGGTACCTGTTTCTTCCCATAATTTTATCGTTATGCCCCATAACACAATGTGCAACAGTGGTAGAAGATCTCAAAAACTTACATCAACCTCCAGACTTCAACTCTACAATTTTGTCCAATTGTCTCAAGAACCCATCTCTTAGGCACTGCAGCTCCTCTCCAATGATGGACCTTgatgaaatattcaaattcacTATTGTTGCAAGCCATCTCTGCAATGAATCAAAGAACCCCAATTGTGTGGAGTCATTCCCCAAAGTTGATCTTAGAAACCGCCCAAACATTGCACCTCTTTATTTGtcatttgatttcttttggAAGTATTGCCCCTTGAGCATTATGTCCATTGATTTGTCCAACAATTCTATGAAGGGCGATTTTCCAACCGATGTTCTTTATTGCACCCAAATCCAGTCTCTTGATCTAAGTATCAATGCATTTTCTGGTGACATTCCAATTCAAAGTTTCTCTCCCCTGACCAACCTCACTTTTCTCAACCTCTCCTATAACTGCTTTTCAGAGAGTAAAGTGTCTGATTCCCAATTCTTCAAAAGGTTTAATTCATCTAGTTTTCTTCATTCTGGTGCTCTCTTGGATCACAAAAGGTTTACAGTAAAGGCTGTTGTTCTATTGGTTGGCTTTCCCATCCTTGTCATTTTGATGGTAGTTTGTTTGGTATGGCTTTGTTTCCAAAGGCCTGATTTTCTACCAAGTAAACTTCAAAGAAGTAGGAGGTTTACACCAGCAATTCTAAAGGCAGCAACTGCTGGTTTTTCAAACAACAATTTGGTGGGGATGAGTGATGTTGTTTACATCTACAAAGGGATCTTGAGAGATGGTACTGAAGTGAAAATTGAGATGTACTGGGATGACATACCAAGGGATAGTTACCGTAAATTTGTTGAAGAGTGTAAGGTTCTGTCTAAGTTACACCACAAGAACCTTGTAAGAGTTCTGGGGTGGTGTAGGAGCAGAAAATTCAGGGCCATTATAACAGAATggacaaaagaagaaaatgtggaAATGTGGTTATCAGGGTCAGGTCCACCATGGAATCATAGACTTAAAGTGTTAATGGGAGTTGTAGAATGCATGCGTTATCTGCAGGAGGAATGGCCTGAAGTTGACTATGAACTCAACACAAGCAGTATTTTATTGTCTGACTATGTGGAACCATTAATTTCGAGGTTCAAAGTTGGAGATCAAAACAGCAATcgaagaaAGATACATAGGTTTGGAGTATTCCTGCTAGAAATGATACTAACCAGAAAGGTTCAAGAGGAGTTTGATAGAGGTGATGCAGGAACTATTAGGTACATGAGAACCCTTAATCCTGCAGATTTGAAGCAGATGATTGATGAGAAATTGGAAGTAACTGAAACAAATTTTCATCAAGTTAAGCAGGTTCTATCTCTAGGATTAATGTGCATAGACCAATCAAACAAGGAGCAGCCAAGCTTGGCCTTGATATTTAACACTATAGCAAGAGCCTACAAGACTAGCCTTTTATTGCCATCTGCAAATCATAGAATATTTCACGGGGAGAGATTTAAGGGACAGATGCGTGTTCAAACCAGATAA 1608 0.3787 MIMATISSTWYLFLPIILSLCPITQCATVVEDLKNLHQPPDFNSTILSNCLKNPSLRHCSSSPMMDLDEIFKFTIVASHLCNESKNPNCVESFPKVDLRNRPNIAPLYLSFDFFWKYCPLSIMSIDLSNNSMKGDFPTDVLYCTQIQSLDLSINAFSGDIPIQSFSPLTNLTFLNLSYNCFSESKVSDSQFFKRFNSSSFLHSGALLDHKRFTVKAVVLLVGFPILVILMVVCLVWLCFQRPDFLPSKLQRSRRFTPAILKAATAGFSNNNLVGMSDVVYIYKGILRDGTEVKIEMYWDDIPRDSYRKFVEECKVLSKLHHKNLVRVLGWCRSRKFRAIITEWTKEENVEMWLSGSGPPWNHRLKVLMGVVECMRYLQEEWPEVDYELNTSSILLSDYVEPLISRFKVGDQNSNRRKIHRFGVFLLEMILTRKVQEEFDRGDAGTIRYMRTLNPADLKQMIDEKLEVTETNFHQVKQVLSLGLMCIDQSNKEQPSLALIFNTIARAYKTSLLLPSANHRIFHGERFKGQMRVQTR 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2006 535 Pfam Protein tyrosine and serine/threonine kinase 281 397 IPR001245 GO:0004672|GO:0006468
Ssu5g2006 535 Gene3D Transferase(Phosphotransferase) domain 1 409 505 - -
Ssu5g2006 535 SUPERFAMILY L domain-like 84 192 - -
Ssu5g2006 535 SUPERFAMILY Protein kinase-like (PK-like) 244 503 IPR011009 -
Ssu5g2006 535 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 534 - -
Ssu5g2006 535 ProSiteProfiles Protein kinase domain profile. 267 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2006 535 Gene3D Phosphorylase Kinase; domain 1 242 343 - -
Ssu5g2006 535 Gene3D Ribonuclease Inhibitor 74 194 IPR032675 -
Ssu5g2006 535 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 8 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2006 Ssu-Chr5 57908846 57910565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2006 124 503 Receptor kinase-like Gene Family AT5G45780 23.163 4.16e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu5g2006 PK_Tyr_Ser-Thr 5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2006 - - gmx:100779045 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2006 5 57908846 57910565 Ssu5g2006 5 57908846 57910565 ECH