Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2002 ATGGACAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGCGCATCATATGGCAGTTGCAGCACGGGCACTTCATCATCTGAAGCTGCTGCTCCCTTCTCTTGTGATCACTGGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTTGGAGGACCCTAGTGGCAACTTTGGTGATCCATTCTCAAACACGAGAGATCCCTTTCTACATGATCTTGTTTTACCTGGCTCTGCCTACTTTAACGGCACAAGTTCTGCTGAAATTAGCAGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTTCTGGTAGTAGTAATAGTTGTGTTTTGGCACAAAAGACTCTTGAGGATGATATGAGAAGGCCTTGTAACAGCATGTTGTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCTATCTCGCCAGTGGTGGATGCTTTTTCAAGGGCACTCAAGCCTTGTGGTGTGGTTTCAGGCAACAACATGATTGATGTAAAGATCTCTAAAGATCATTGTTTGGTGGACAACACAGAAGTGCAGATCTCATCTCCACGGAATCCAGGTCTTAAGAGAAGGAAGAGCCAGGCAAAGAAGTCGATTTGTGTTCCTGCACCAGCTGCTCCAAACAGCAGACAAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGCCAGAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCCAGGAAACAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACTCACAGAAATGCTCTCGCTGGTTCAAACCGATCCCAACCTTCCAAAAGCAACAACATTGCTGCTTCAAAGAATTCAGAAACCACTCCCCAAAATGAGGAAGAGCAGCAGGAGGAGAGCAACAGTGACAGCAATAATGTAAATAACAGTGCATCTGTGAAGGGAGAGAAGCAGCTTGAGATGGATGATGTAGAATTTAGTGATATTGGAGTCCCTCACAAGCCAATGTCCAAGATGAAGAACTACCAACAACTTGATCAGGACTTGTTTGCAGAATTGGGACAAATAGAAGCTCACTCACTAAACCTATTGTCTCCACAAGGTTTTGATGATCAGCAAAGGGAATCCAACGCTTTAGATTCATTCCATCTCTTTGACTGGAGCGGTGATAACTGCACCAAGTACCACCTCGTTTGA 1275 0.4486 MDNYQGDLSDIIRASGASYGSCSTGTSSSEAAAPFSCDHWQFSSDPMIFSSVLEDPSGNFGDPFSNTRDPFLHDLVLPGSAYFNGTSSAEISSSGALEEATCFGGGVSGSSNSCVLAQKTLEDDMRRPCNSMLSNMIQISPNDKLPISPVVDAFSRALKPCGVVSGNNMIDVKISKDHCLVDNTEVQISSPRNPGLKRRKSQAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSNRSQPSKSNNIAASKNSETTPQNEEEQQEESNSDSNNVNNSASVKGEKQLEMDDVEFSDIGVPHKPMSKMKNYQQLDQDLFAELGQIEAHSLNLLSPQGFDDQQRESNALDSFHLFDWSGDNCTKYHLV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2002 424 Gene3D WRKY domain 199 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2002 424 Pfam WRKY DNA -binding domain 227 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2002 424 MobiDBLite consensus disorder prediction 279 316 - -
Ssu5g2002 424 MobiDBLite consensus disorder prediction 279 347 - -
Ssu5g2002 424 MobiDBLite consensus disorder prediction 327 341 - -
Ssu5g2002 424 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 416 IPR044810 GO:0003700
Ssu5g2002 424 SMART WRKY_cls 225 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2002 424 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 5 416 - -
Ssu5g2002 424 SUPERFAMILY WRKY DNA-binding domain 223 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2002 424 MobiDBLite consensus disorder prediction 251 270 - -
Ssu5g2002 424 ProSiteProfiles WRKY domain profile. 220 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2002 Ssu-Chr5 57778047 57781338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2002 1 390 WRKY Transcription Factor Family AT2G34830 42.155 4.28e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g2002 WRKY 9.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2002 - - gmx:100776919 629.402