Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2001 atgaaaatatgcgTCGATTCTTTCCCTCTACTCTGTGTGTGCGCGTTTTGTGAATTTTTGCAGTACGAGAAGGTTGAGAAGATAGGTGAAGGAACCTACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAACGAGACCATCGCATTGAAGAAGATTCGCCTGGAGCAGGAGGATGAAGGGGTTCCCAGCACCGCCATTCGAGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTACACAGTGAGAAGCGTTTGTATCTGGTTTTTGAGTACCTTGATTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCAAAAGATCCACGACAAATAAAAATGTTCCTTTACCAAATTCTCTGTGGCATTGCTTATTGTCATTCACATAGAGTTCTTCATCGAGACTTAAAACCACAGAATTTGTTGATAGATCGCAGCACTAATGCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGAATTCCTGTTAGAACATTTACACATGAGGTGGTAACACTCTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGTTGCATATTTGCAGAGATGGTAAATCAACGACCTCTTTTCCCTGGGGACTCTGAGATTgatgaattgtttaaaatattcagAATCATGGGTACACCAAATGAAGATATATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCCGCCTAAGGACCTGAAAACTGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTTCTAGCATCCTTTGCTTGGATCCCAGCAAAAGAATTACTGCCAGGAGCGCTCTTGAGCATGAATActtcaaagacattaaattTGTACCCTGA 939 0.4143 MKICVDSFPLLCVCAFCEFLQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQIKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDIWPGVTSLPDFKSAFPKWPPKDLKTVVPNLEPAGLDLLSSILCLDPSKRITARSALEHEYFKDIKFVP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2001 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Ssu5g2001 312 PANTHER CELL DIVISION PROTEIN KINASE 20 309 - -
Ssu5g2001 312 ProSiteProfiles Protein kinase domain profile. 22 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2001 312 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Ssu5g2001 312 Gene3D Transferase(Phosphotransferase) domain 1 104 310 - -
Ssu5g2001 312 CDD STKc_CDK1_CdkB_like 22 305 - -
Ssu5g2001 312 Pfam Protein kinase domain 22 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2001 312 SUPERFAMILY Protein kinase-like (PK-like) 21 308 IPR011009 -
Ssu5g2001 312 Gene3D Phosphorylase Kinase; domain 1 20 102 - -
Ssu5g2001 312 PANTHER - 20 309 - -
Ssu5g2001 312 SMART serkin_6 22 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2001 Ssu-Chr5 57725986 57733829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2001 21 312 Core Cell Cycle Gene Families AT3G48750 85.616 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu5g2001 Pkinase 5.9e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2001 K02206 - gmx:100127418 573.163