Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1997 ATGGAGTGGAGGCGCAGGTCGAAGAAGCTCCCCCCCCAGCAGCCTCGCTTGGAGCGCCTCAACGCCAAGAAGGGCATCAATTACCAACCTCCACCCTCTCCCCCTTCCCCCTCTTCCTCCCTCTCCGCCCACCAAACCAGCTTCCGCCTCTTCGGCACCGACGGCGAATTCGACCGCATCTTCCAGACCTTGGGCCTCTCCGGGCCCGAAGACTTCTCCATCCCCACCGCCGACTGGGAGGCCCGCAAGGCCCGCATCAATTCCGCTGCGCCCGCCCCTGCTCCCCACCAGATCGAGCCCGTTCGGCCTCCCCTTCCAGACCACGCCGTTTCCGGTTCCGTTCCCGCCGTCGGTTCCCCTTGGTCCTCCGGGGAGCACGACGGAGGTGCCAGTATTGTCGGTAGAGTGAGACACGGCGAGAGGAGCGTGCTCTTCACCGATTCCGGCTCCTTCACTACTTCCCACGACGACGACAGTGATGTCGGCGGCGAGAGGGCTTGCTCGGTTTCTAATTCCGCCGCGGTCGATGAGCTGGTTATTCCGTATGCCACCTCGAATGCGTGGTTCAGACGGACTTTTTCGTCGTGGCAAAAGGGTGACGTCTTGGGAAACGGGTCCTTCGGAACGGTGTACGAAGGGTTTACTCATGATGGATTCTTCTTTGCTGTAAAGGAGGTGTCTTTGATGGATGAAGGTGGCCAGGGAAAACAGAGCATTTTCCAACTTCGGCAGGAAATAACACTTTTGAGTAAGTTTGAACATGAAAACATAGTTCGATATTATGGCTCAGACGAGGACAAAAGTAAACTATATATCTTCCTTGAGCTTATGTCAAAAGGGTCATTAGCAAGTCTTTATcaaaagtattctttaaatGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAGAGGCTTGAagtatcttcatgatcatgatGTGGTCCACAGggACATCAAGTGTGCTAATATACTGGTTGATGTAAATGGGGCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTTAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAAGAACCAAGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACAAGGAAGCCTCCTTATTCTGATTTGGAAGGAATGCAAGCATTATTTCGGATTGGCAGGGGTGAACCTCCACCTATTCCTGAGTATTTATCGAAGGATGCCCGAGATTTCATTCTTCAATGCTTACAAGTTAACCCAAACAATCGCCCAACTGCAGCTCAGCTATTGGATCATCCATTTCTTAGGAGAACACTTCTATCTCCCTTAAGTTCTGCTTCTCCGCTTAGGAATATATATCGGTTATAA 1410 0.4979 MEWRRRSKKLPPQQPRLERLNAKKGINYQPPPSPPSPSSSLSAHQTSFRLFGTDGEFDRIFQTLGLSGPEDFSIPTADWEARKARINSAAPAPAPHQIEPVRPPLPDHAVSGSVPAVGSPWSSGEHDGGASIVGRVRHGERSVLFTDSGSFTTSHDDDSDVGGERACSVSNSAAVDELVIPYATSNAWFRRTFSSWQKGDVLGNGSFGTVYEGFTHDGFFFAVKEVSLMDEGGQGKQSIFQLRQEITLLSKFEHENIVRYYGSDEDKSKLYIFLELMSKGSLASLYQKYSLNDSQVSAYTRQILRGLKYLHDHDVVHRDIKCANILVDVNGAVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGYGLAADIWSLGCTVLEMLTRKPPYSDLEGMQALFRIGRGEPPPIPEYLSKDARDFILQCLQVNPNNRPTAAQLLDHPFLRRTLLSPLSSASPLRNIYRL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1997 469 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 13 94 - -
Ssu5g1997 469 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 94 - -
Ssu5g1997 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Ssu5g1997 469 SUPERFAMILY Protein kinase-like (PK-like) 180 461 IPR011009 -
Ssu5g1997 469 ProSiteProfiles Protein kinase domain profile. 196 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1997 469 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 159 452 - -
Ssu5g1997 469 Pfam Protein kinase domain 197 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1997 469 SMART serkin_6 196 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1997 469 MobiDBLite consensus disorder prediction 1 46 - -
Ssu5g1997 469 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 159 452 - -
Ssu5g1997 469 ProSitePatterns Protein kinases ATP-binding region signature. 202 224 IPR017441 GO:0005524
Ssu5g1997 469 Gene3D Transferase(Phosphotransferase) domain 1 194 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1997 Ssu-Chr5 57695750 57700738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1997 16 88 MAP Kinase Kinase Kinase AT4G08500 39.535 2.27e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu5g1997 Pkinase 2.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1997 - K13414 gmx:100820552 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1997 5 57695750 57700738 Ssu1g0037 1 1859779 1863260 PCT