LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g1996	ATGGGTAGAGGCCGAGAAAAACCCACAGAGATGGAAATTGATCTCTCTTTGAAGATAGATACTGATGACGagcaaatagaagaagaagatgaagaagcaGAAGCAGCAAAGGTAGATGAGCGAGTGAAAGAGAATGAAGAGGAAGAAATGGCACAGATTCCGGATAATAAGGAAGAAGTCCCTGAAGCCACAGCTGGTGAAATAGAAGATGATACATCAGTGATAGAAACATTTTTGCAAgataacacaaaaacaaaagagTTAAGTGTCTTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTCGTagatcaaaaaatgaaagactATTATGATCTGCAAAAGAAATTTTCAGCCATCCaggaaaacaataaaagaaagGATCATCTGATTTCTCTCTCACTTCGAGACATTGCAACCACCAGCGGTGAAGGACCATCGGGAATTCTTGAGatctttaacaaaaaaattcaaagagatCCATCACCTCCAAACGCTGATGATAGTTTAAGCGAGAGTGAATTGGGTTTATCACTAAGGTTGCAACCAAGCACAAGTCAAAAAGAAAGTGATGTGGGAAATAAGGAAGACAAAAAAGATCAACAATTGGCAAGTTTTGCATCAGTGCAGAACAACTTGCAGCGGACACATTCGTTGCCCGGTATTACAACCCATGCTGCCTCCCCTCCTAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAGGCTGCCACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCACGAGCCTATTATCGTTGCACTGTAGCCCCAGGCTGCCCCGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTTATTACAACCTATGAAGGGACACATAACCATCCACTCCCTGTGGGTGCAACTGCTATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGACTCAAGCAACCCCATTTCAGTTGGCACCTCTAGTTTCACCCAAGCACCCTTTCCTTACAACGGCTTCCACCCATTAAACCCAGCTTCAAATTTTAGGAGCATAAACCCCAGTGATCCATCCAAAGGGATTGTTCTTGATCTCACTAACAACCTCAGCGAACCACTACGTTTTTCTACTGGTAGCTCCTCCAATACTACAACCGAGCCTTGTTTTTCTTGGATGCCAAACAAATACCAAGGTGGTGCCATTGCAATGAACAATTTTCACAAGCCTAGACCAGTGGATATTCATGATAGAATTTGGAAAGGAGCAGAAAGCAAGCCACTAGATGACAATGTGTCCGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCAGCGGCCATAACATCACTCATGAATAAAGAGAGCCACGCTACTCATCCTATAGGGACTTCCTTTGCTCCTAGGAGTGGCCAAAATGGTAGCTAG	1476	0.4099	MGRGREKPTEMEIDLSLKIDTDDEQIEEEDEEAEAAKVDERVKENEEEEMAQIPDNKEEVPEATAGEIEDDTSVIETFLQDNTKTKELSVLQMEMESMKEENKVLRKVVDQKMKDYYDLQKKFSAIQENNKRKDHLISLSLRDIATTSGEGPSGILEIFNKKIQRDPSPPNADDSLSESELGLSLRLQPSTSQKESDVGNKEDKKDQQLASFASVQNNLQRTHSLPGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISVGTSSFTQAPFPYNGFHPLNPASNFRSINPSDPSKGIVLDLTNNLSEPLRFSTGSSSNTTTEPCFSWMPNKYQGGAIAMNNFHKPRPVDIHDRIWKGAESKPLDDNVSAIASDPKFRVAVAAAITSLMNKESHATHPIGTSFAPRSGQNGS	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g1996	491	MobiDBLite	consensus disorder prediction	36	62	-	-
	Ssu5g1996	491	Pfam	WRKY DNA -binding domain	254	312	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g1996	491	MobiDBLite	consensus disorder prediction	1	62	-	-
	Ssu5g1996	491	Coils	Coil	88	115	-	-
	Ssu5g1996	491	MobiDBLite	consensus disorder prediction	1	20	-	-
	Ssu5g1996	491	MobiDBLite	consensus disorder prediction	21	35	-	-
	Ssu5g1996	491	Coils	Coil	19	48	-	-
	Ssu5g1996	491	SMART	WRKY_cls	253	313	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g1996	491	MobiDBLite	consensus disorder prediction	170	195	-	-
	Ssu5g1996	491	ProSiteProfiles	WRKY domain profile.	248	314	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g1996	491	Gene3D	WRKY domain	238	315	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g1996	491	PANTHER	WRKY TRANSCRIPTION FACTOR 9-RELATED	12	476	-	-
	Ssu5g1996	491	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	12	476	IPR044810	GO:0003700
	Ssu5g1996	491	SUPERFAMILY	WRKY DNA-binding domain	246	314	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g1996	491	MobiDBLite	consensus disorder prediction	163	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g1996	Ssu-Chr5	57662253	57664775	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g1996	43	376	WRKY Transcription Factor Family	AT1G68150	46.839	1.79e-80	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu5g1996		WRKY	1.6e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g1996	-		-	gmx:100820209	782.326