Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1989 ATGGCGTCGTCGAAGGTTGTCTCGACGAATCCGGATCTGCCACGCGACTCTTCTATAATATCTCCCCTCTCCTCCCTCCTCTCCGATCTGCACCCGGCCTCCATGGACGACCTCCTCAAGTCCATCGCCCCAGCCGCCAAGACCGTCGACGACGTCTGGAAGGAGATCGTCGCCGGCGCCGCACACGACGACTCAGCCGCCGCCGACAATGCCAACTGCGGCAGCGAGGCAGCCCTCGAGGAGATGACCCTCGAGGATTTCCTCACCAAGGCGGGCGCCGTCCGGGAGGAAGACGTCCTCGTCGGAGGGGTTCTCCCTCCTCCTCATCCTCCTCCTTGTTCTTCCTCTCTTCCCttccctctccctctccccGCCGAGGGCTCTTCCTCCTCCGTCGAGCCTTTCGGCAACGGTGTCGGGGCCTCGCCGTCGGCGCACAAAGGGAAGAGGAGGGCCGTTGAGGAGCCCGTTGATAAGGCCACGCTTCAGAAGCAGAGGAGGATGATCAAGAATAGAGAGTCCGCCGCCAGGTCCAGGGAACGCAAGCAGGCTTACACGTCGGAGCTTGAGTATCTAGTTCACCAGCTGGAGCAAGAGAACGTGCGGTTATTGAATGAAGAGGCTGATAGGAGAAGGCAGAGGAAAAAGCAGGTATGTAATATATCTACTCTCTTTTTGACATGTTATTTTGCATGTTCTTGTGTATTTGATCTGGTATCCTTGAAGCTGTCATGTAATGACATGTCTTCATTGAAGAAGCCAAAttccatttataattttcttttaataaatgtgGATTCAATGATAGACAGAAGCTCAAGcctgatattaaaaatgaaaaatgttggaAATTCCAGCTTAATGATGTTACTaccttttgtctttttataa 891 0.4949 MASSKVVSTNPDLPRDSSIISPLSSLLSDLHPASMDDLLKSIAPAAKTVDDVWKEIVAGAAHDDSAAADNANCGSEAALEEMTLEDFLTKAGAVREEDVLVGGVLPPPHPPPCSSSLPFPLPLPAEGSSSSVEPFGNGVGASPSAHKGKRRAVEEPVDKATLQKQRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENVRLLNEEADRRRQRKKQVCNISTLFLTCYFACSCVFDLVSLKLSCNDMSSLKKPNSIYNFLLINVDSMIDRSSSLILKMKNVGNSSLMMLLPFVFL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1989 296 MobiDBLite consensus disorder prediction 111 130 - -
Ssu5g1989 296 Pfam bZIP transcription factor 160 206 IPR004827 GO:0003700|GO:0006355
Ssu5g1989 296 SUPERFAMILY Leucine zipper domain 164 209 IPR046347 GO:0003700|GO:0006355
Ssu5g1989 296 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Ssu5g1989 296 CDD bZIP_plant_BZIP46 163 203 - -
Ssu5g1989 296 Coils Coil 186 216 - -
Ssu5g1989 296 Gene3D - 162 213 - -
Ssu5g1989 296 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 213 IPR004827 GO:0003700|GO:0006355
Ssu5g1989 296 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 218 IPR043452 GO:0003700|GO:0045893
Ssu5g1989 296 PANTHER OS05G0437700 PROTEIN 2 218 - -
Ssu5g1989 296 SMART brlzneu 159 221 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1989 Ssu-Chr5 57523483 57525063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1989 47 221 bZIP Transcription Factor Family AT5G44080 40.625 2.16e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g1989 bZIP_1 4.8e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1989 K14432 - gmx:100101890 242.662