Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1985 ATGGATCATTTATACAATGTTGACGCCATAGGTAATGTGAAGCCTGTACTGTTAATGATAGTGCTCCAGATTCTATATGCAGTGGTGAATATCATGTTAAAGTTGGTAGCAGATGATGGAATGAGCTTAAGTGTTCTTATTGCCTACCGGTTCATCTTTGCTTCTGCCTTCATTGTTCCGCTTGCTCTCATCTTTGAAAGgGGATCCTTACTACAAAATCTCTATGTTAAATCATTGGCCTTGACATCTGCAGTATATGTTACAGCCATGTTGAACCTCATCCCTGCTGTCACCTACATCTTGTCTGTTTCTCTTCGACTTGAGAAGTCAAATCTTGGAGCACCAGCTGGGATGGCCAAGCTGCTGGGAACTTTAACAGGAATTGGTGGTGCCATGATCCTCACTTTCTACAAAGGAAGAAAGCTATGCTTCTGGTCAACACACATTGACTTGTTGCACCATGCGCCATTACCACACGGTGCCCCCACGGGTTCTCTCTTGTGGGGCTGCATACTAGCTTTTGCAGCCTCTCTGAGTTACTCACTCTGGTTGATAATCCAGACAAAGATGAGCGAAAAGTTTCCGTGGCACTATTCAATTGCGGCTTTAACCAGTGTAACTGCCTCAATCCTATCCGTTATATTTGCTCTTTGTACGGAGAAAGATTGGAGCCAGTGGAAACTTGGCTGGAACTTGAGGCTTCTAACAGCAGCTTCTGCGGGTATCTTGGCCTCTGGAGTGTGTTATGCCCTTTTAGCATGGTGTGTGCGCATTAAGGGACCTCTGTTTGCGTCTGCTTTTAGTCCTCTAATGCTAGTGCTAGTGACCCTTGCCGGGCCAGTGGTACTAGATGAGTGTCTCAATGTTGGAAGTCTAATAGGATCAGTGTTGATTGTGGGCGGATTGTACATGTTGTTGTGGGGTAAAAGCAAGGAAACACGGAGGGAGCCGAGTGACATGGTGTCCTCAAAAGGCTCTGTTCAATGTGATCAAATCCACATTACCAACCCATCTTTGGCATTCAGCCAAAGGGAGCATGACAAGAAGATTGTAGCAAGTGTTCCTCCCTATACATCGTCAAGTGTCAACCATTCTTAG 1098 0.4536 MDHLYNVDAIGNVKPVLLMIVLQILYAVVNIMLKLVADDGMSLSVLIAYRFIFASAFIVPLALIFERGSLLQNLYVKSLALTSAVYVTAMLNLIPAVTYILSVSLRLEKSNLGAPAGMAKLLGTLTGIGGAMILTFYKGRKLCFWSTHIDLLHHAPLPHGAPTGSLLWGCILAFAASLSYSLWLIIQTKMSEKFPWHYSIAALTSVTASILSVIFALCTEKDWSQWKLGWNLRLLTAASAGILASGVCYALLAWCVRIKGPLFASAFSPLMLVLVTLAGPVVLDECLNVGSLIGSVLIVGGLYMLLWGKSKETRREPSDMVSSKGSVQCDQIHITNPSLAFSQREHDKKIVASVPPYTSSSVNHS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1985 365 Pfam EamA-like transporter family 167 306 IPR000620 GO:0016020|GO:0016021
Ssu5g1985 365 PANTHER WAT1-RELATED PROTEIN 13 69 IPR030184 GO:0016021|GO:0022857
Ssu5g1985 365 PANTHER WAT1-RELATED PROTEIN 68 345 IPR030184 GO:0016021|GO:0022857
Ssu5g1985 365 PANTHER WAT1-RELATED PROTEIN 13 69 - -
Ssu5g1985 365 PANTHER WAT1-RELATED PROTEIN 68 345 - -
Ssu5g1985 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 210 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1985 Ssu-Chr5 57400362 57403646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1985 12 340 Nodulin-like Gene Family AT1G68170 39.377 3.05e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1985 - - aprc:113859960 560.066