Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1984 ATGAAAGAGGTTGGTAATTTGTTGCAAACGTTGAAACCAGACATTCTAATGGTGTTTGTTCAGATTGCATTTGCTGCAGTGAATGTTATGTACAAGCTGGCCATAAATGATGGAATGAGCATGAGCATAGCTTCTGCCTACCGCCTCGCTTTTGCATCGGCTTTCAGTGTCCCCGTGGCTCTTCTCTTTGATAGGAAGAAGAGACCAAAGATTACGTGGAGGGTGCTTTTATTGGCATTTCTGTGTGGATTGTTTGGgGGAAGTTTATTTAGTAATCTTTACCTCGAGGCCCTGGCTTTGACGTCAGCAACGTTTATGTTAGCCATGattcgaaaattaaatttggaaGTAGCAGAAGGAAGGGCCAAGGTGATAGGCACCATAATTGGAATTAGTGGGGCAATGCTGATGACCTTTTTCAAAGGCgtagaaattaatatttggaCGTCCAAAATCAACGTTATGCATCCACATCAGAACCAAAATGGGCATGTGGCATCGCACCACGCTGACTTTCGAAATAAACTGTTGGGTGTTCCATGTGCCATAGCAAGCTGCTGCTTTTATTCTCTGTGGTACATCGTTCAGGCTAAAATGAATGCAGAATTCCCGTGCCCTCACTCAAGCACAGCTTTAATGGCCACAATGGGAGCGATACAGGCCACTGTTTTTACTCTTTGTGTTGAAAGGGATTGGAACCAATGGAAGCTGGGTTTCAATATCAGGCTTCTAACTGTGGCTTATTCGGGAATTGTGGCCTCTGGAATAGTGGTTATTATCATTGCCTGGTGCATAAAGAAGAGAGGCCCTCTATTTGTGTCTGTTTTCAATCCTCTACAGCTTTTGTTAGTGGATATCGCTGCTTATTTAATGTTGgatgagaaattatatttaggaaGTGTGCTTGGAGCAGTGATGATTGTGTGCGGTCTATACACGGTGCTTTGGGGTAACGCCCgagaattgaaaaagaagtcTCAGTTAGTGCCATTAGAAAACACCCGAGGAGAATCTGAAAACGTTGAGGGTTTACGTACGCCGAGCCCTTAG 1050 0.4162 MKEVGNLLQTLKPDILMVFVQIAFAAVNVMYKLAINDGMSMSIASAYRLAFASAFSVPVALLFDRKKRPKITWRVLLLAFLCGLFGGSLFSNLYLEALALTSATFMLAMIRKLNLEVAEGRAKVIGTIIGISGAMLMTFFKGVEINIWTSKINVMHPHQNQNGHVASHHADFRNKLLGVPCAIASCCFYSLWYIVQAKMNAEFPCPHSSTALMATMGAIQATVFTLCVERDWNQWKLGFNIRLLTVAYSGIVASGIVVIIIAWCIKKRGPLFVSVFNPLQLLLVDIAAYLMLDEKLYLGSVLGAVMIVCGLYTVLWGNARELKKKSQLVPLENTRGESENVEGLRTPSP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1984 349 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 8 340 - -
Ssu5g1984 349 Pfam EamA-like transporter family 177 315 IPR000620 GO:0016020|GO:0016021
Ssu5g1984 349 Pfam EamA-like transporter family 12 107 IPR000620 GO:0016020|GO:0016021
Ssu5g1984 349 PANTHER WAT1-RELATED PROTEIN 8 340 IPR030184 GO:0016021|GO:0022857
Ssu5g1984 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1984 Ssu-Chr5 57380203 57389909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1984 11 342 Nodulin-like Gene Family AT1G25270 38.793 2.23e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1984 - - gsj:114424758 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0023 1 1699933 1702137 Ssu5g1984 5 57380203 57389909 PCT