Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1983 ATGAATGACGTGGAAGAAGAGACCAAAACTTACAAGGAGGGCACTGTTTCTGGGATTTCTGTGTGGATTGTTTGGGTATGCTACGTAAATTCTTCACCCTTCGCCATATCACAACTTATTTTTTGGCCTATATATATTGTCACTGGTATAagGCAAAGTTTATATCTAAACCTTTACCTGGAGGGCCTAGCTTTGACGTCCGCAACGTTTATGTTGGCCATGACCAACCTTGTCCCAGCCATTACCTTCATCGTGGCCATATCTTCCCGATacgaaaaattaaatttgggagTAGCAGAAGGAAAAGCCAAggtgataggaacaataattgGAATTAGTGGTGCAATGCTGATGACCTTTTACAAAGGGgtagaaattaatatttggtCTGCGAAAATCAACCTTATGCATCCACATCAGAACCAAAATGGACATGTGGTGTCACATCATGCTGATTTTCGTAATGAAGTGTTGGGAGTTCCTTGTGCTATAGCAAGCTGCTTCTGTTTTTCTTTGTGGTTTGTCATTCAGGCTAAATTGAATGAAGAATACCCAAGCCATCACTCAAGCGCAGCTTTAATATCCACAACGGGAGCAATACAGGCCACTGTTCTTGCTCTTTGTGTTGAGAAGGATTGGAACCAATGGAAGCTGAATTCCGGTCTCAGACTTCTAACTGTGATTTATCCGGGAATTGTGGTTTCCGGAATGGTGGTTATAGCTATTGCCTGGTGCATAAAGATGAAAGGCCCTCTATTTGCGTCTATTTTCAATCCTCTACAGCTTTTGCTTGTGGCTATCGCTGCTTATTTGATGTTGAATGAGAAGTTATATTTAGGAAGTGTTCTTGGAGCAATGTTGATCGTGTGCGGCCTATACGCAGTGCTTTGGGGTAAggacaaagaaatgaaaaagaggaCTCAGTTAGTGTCATTAACCACCAGAGAATTTGAAACTGTTGAGGTCCACGACAGTAAATCGTGA 984 0.3902 MNDVEEETKTYKEGTVSGISVWIVWVCYVNSSPFAISQLIFWPIYIVTGIRQSLYLNLYLEGLALTSATFMLAMTNLVPAITFIVAISSRYEKLNLGVAEGKAKVIGTIIGISGAMLMTFYKGVEINIWSAKINLMHPHQNQNGHVVSHHADFRNEVLGVPCAIASCFCFSLWFVIQAKLNEEYPSHHSSAALISTTGAIQATVLALCVEKDWNQWKLNSGLRLLTVIYPGIVVSGMVVIAIAWCIKMKGPLFASIFNPLQLLLVAIAAYLMLNEKLYLGSVLGAMLIVCGLYAVLWGKDKEMKKRTQLVSLTTREFETVEVHDSKS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1983 327 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 43 316 - -
Ssu5g1983 327 Pfam EamA-like transporter family 158 296 IPR000620 GO:0016020|GO:0016021
Ssu5g1983 327 PANTHER WAT1-RELATED PROTEIN 43 316 IPR030184 GO:0016021|GO:0022857
Ssu5g1983 327 SUPERFAMILY Multidrug resistance efflux transporter EmrE 216 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1983 Ssu-Chr5 57292760 57356863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1983 58 305 Nodulin-like Gene Family AT1G68170 41.935 2.03e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1983 - - gmx:100803545 389.423