Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1981 ATGAATGACGTATGGAAACTAGTGCAAGACTTAAAGCCTGTACTGCTGATGGTATTGGTGCAAATTGCATATTCTTCTGTGAATATTCTCTATAAGCTCGCCATAAATGATGGAATGAGCATTAGGGTGGTCACTGCCTACCGCCTAATTTTCGCAGtagttttcactttttctcttgCCCTTATTTTCGAAAGAAAGAGCAGGCCAAAGCTGACATGGAGGGTGCTTTTCATGTCATTTTTTAGTGGCCTATTTGGAGCAAGTTTATTCCACAACCTATTCCTCGAGGCCTTGGATTTGGTGTCAGCAACATTCGCTACTGCTGTTTATAATCTCGTTCCTGCAGTCACTTTTATATTGGCCCTCTCATGCGGGTTGGAAAAGTTAAACATGCGAACCCCAGCAGGGAAGGCCAAGGTGTTGGGAACGATAATAGGAATAGGCGGGTCAATGTTGCTGACATTTTTCAAAGGGACAGAAATTAACGTTACGACCTTCCGCATTGATCTTTTGCATCAAAATGACCAAGTAGTAACTTTGCATACTGACTCTGGTCATAAATTTCTGGGTGTTATGTGTGGCTTTGGAAGCTGCTTCTGTTTTGCATTATGGCTCATCATTCAGTCTAAGATGAGCAAAGAATACCCAAGTCATCACTCAAGTACTGCATTGATGTCCTTAATGGCTGCAATACAAGCCACAGCCTTTGCCCTTTATGTTGAGAAGGATTGGAGCCAGTGGAAGTTGCGTTCAAGCATTAGGATTCTAACTGTGGCTTATACGGGAATTGTGGCCTCCGGATTAGTGGTCATTGCCATTGCATGGTGTGTACGGATGAGAGGCCCAATGTTTGTATCTGTTTTCAACCCTCTGATGCTTGTTCTTGTGGCTGTGGCTGATTCCTTGATGTTAGATGAGAACTTATATGTAGGAAGTGTAATTGGAGCCGTGCTAATTGTGTGTGGCTTGTACATGGTTCTATGGGGTAAGagcaaagaaatgaaaaaggtgaATCAGTCGGTCTCATCAGAAATCACCCAAGAGCTTGAAGCAACTGAAGTTGTTGTCCTGTCCACGACAATAAATAATGACAATAGTGACTGCACTAACAGCACCAACGCCAATTGCAAAAGCAATATAGTTGCCAAGGTTTCTTGA 1158 0.4162 MNDVWKLVQDLKPVLLMVLVQIAYSSVNILYKLAINDGMSIRVVTAYRLIFAVVFTFSLALIFERKSRPKLTWRVLFMSFFSGLFGASLFHNLFLEALDLVSATFATAVYNLVPAVTFILALSCGLEKLNMRTPAGKAKVLGTIIGIGGSMLLTFFKGTEINVTTFRIDLLHQNDQVVTLHTDSGHKFLGVMCGFGSCFCFALWLIIQSKMSKEYPSHHSSTALMSLMAAIQATAFALYVEKDWSQWKLRSSIRILTVAYTGIVASGLVVIAIAWCVRMRGPMFVSVFNPLMLVLVAVADSLMLDENLYVGSVIGAVLIVCGLYMVLWGKSKEMKKVNQSVSSEITQELEATEVVVLSTTINNDNSDCTNSTNANCKSNIVAKVS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1981 385 PANTHER WAT1-RELATED PROTEIN 12 360 - -
Ssu5g1981 385 PANTHER WAT1-RELATED PROTEIN 12 360 IPR030184 GO:0016021|GO:0022857
Ssu5g1981 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 332 - -
Ssu5g1981 385 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Ssu5g1981 385 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Ssu5g1981 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1981 Ssu-Chr5 57236708 57239348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1981 11 375 Nodulin-like Gene Family AT1G25270 38.356 1.23e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1981 - - gmx:100813812 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1981 5 57236708 57239348 Ssu1g0023 1 1699933 1702137 PCT
Ssu1g0022 1 1665247 1667033 Ssu5g1981 5 57236708 57239348 PCT