Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1978 atgtttttccgTTTTCGGTGTGTGAACGACAACTGGCAAGAGTTTGATCTGGACTTTGCCTCCCTAACtgtttgtgtatatatatttgttcattGTGGAACTCTTTGTTGCAGTCCAATCTCAAAGACGAAGATGAAGAACATTTGGGATACTCTGGAGGAAAGCAAACCAGCCATCCTAATGGTTTTAGTGCAAATCACTTTTGCTGCTTGCAATGTGTTCTACAAGCTTTCCATAGACGATGGAATGAGCACTATTGTGACTTCAGCCTACCGTCTTGTCTTCGCTTCCGCTACCACTATTCCTCTTGCTCTTATTTTTGAAAGGAAGAGACCGAAGATGACATGGAGGGTGTTTATTATGGCATTTCTCAGTGGATTGTTTGCTGGAACGTTATTTCAAAACCTATTCTACGGGGCCCTGACTTTGGCGTCAGCAACCCTTGTGTCCGCCATCTACAACCTAATTCCATCCATGACCTTTATCATGGCGGTGGCCGGCGGTTTCGAAAAATTAAATTGGGGAGCAGTAGCAGGAAAGGCCAAGGTGGTAGGAACTCTACTTGGACTTGCTGGGGCAATGCTGCTGACATTTTACAAAGGGCTAGAGTTTGATATTTGGCCTTTTCGAATCAACCTTTTGCAACCACGTGAGTACCAAGATGAGCTAGTGATTGACACTGTTCAGGAGCTGTTAGGGGTTCTATGTGTCGCCGCAAGCTGCTTCTGTTTCTCCTTATGGCTGATCATTCAGGCTAAGATGAGTCAAGAATACCCGTGCTATATGACAAGCATAGCTTTGTTGAATTCGATAGGAGCAATACAATCccttatttttggtttttgtgttGTGAGGGATTTGAACGAATGGAGACTCGGTTGGGATATCAGGCTACTAACTTCGGCCTTTTCGGGAATTTTGGCCTCCGGAGTAATGATTGTAGTCATGGCATGGTGCGTCCGGACAAAAGGCCCATTATTTGCGTCGGCTTTCAACCCTCTAATGCTTGTGATTGTGGCAATCGCCGCTTCTTTGACATTGGATGAGAGGTTATATTTAGGAAGTTTGCTTGGAGCAGTGCTGATTGTGTGTGGCCTATACGCGGTGTTATGGGGTAAGAGCAAAGAAATGCATAAGCAGGCTCAATTGGAGCCACCAGATTTCACCGAAGATTTCGAAGTTACAAGGCCGTTGTTAAATCCATGA 1206 0.4337 MFFRFRCVNDNWQEFDLDFASLTVCVYIFVHCGTLCCSPISKTKMKNIWDTLEESKPAILMVLVQITFAACNVFYKLSIDDGMSTIVTSAYRLVFASATTIPLALIFERKRPKMTWRVFIMAFLSGLFAGTLFQNLFYGALTLASATLVSAIYNLIPSMTFIMAVAGGFEKLNWGAVAGKAKVVGTLLGLAGAMLLTFYKGLEFDIWPFRINLLQPREYQDELVIDTVQELLGVLCVAASCFCFSLWLIIQAKMSQEYPCYMTSIALLNSIGAIQSLIFGFCVVRDLNEWRLGWDIRLLTSAFSGILASGVMIVVMAWCVRTKGPLFASAFNPLMLVIVAIAASLTLDERLYLGSLLGAVLIVCGLYAVLWGKSKEMHKQAQLEPPDFTEDFEVTRPLLNP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1978 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 294 375 - -
Ssu5g1978 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 91 199 - -
Ssu5g1978 401 PANTHER WAT1-RELATED PROTEIN 55 394 IPR030184 GO:0016021|GO:0022857
Ssu5g1978 401 Pfam EamA-like transporter family 232 370 IPR000620 GO:0016020|GO:0016021
Ssu5g1978 401 Pfam EamA-like transporter family 57 197 IPR000620 GO:0016020|GO:0016021
Ssu5g1978 401 PANTHER WAT1-RELATED PROTEIN 55 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1978 Ssu-Chr5 57154276 57160838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1978 56 398 Nodulin-like Gene Family AT1G25270 39.535 1.08e-82 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1978 - - mtr:MTR_4g094340 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1978 5 57154276 57160838 Ssu1g0022 1 1665247 1667033 PCT
Ssu1g0021 1 1611664 1618597 Ssu5g1978 5 57154276 57160838 PCT