Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1977 ATGGACTCCACAGTTAGCTTGGCTTGGCTTGGCTTAAGAACCTCTATatatccttttctttctctctttccttcttCAAACCCAAACCAACTTACAACACTAAGCAAAGATGAATATACATGGAAAGTAGTGCAAGAGTCGAAGCCTGCCCTGCTGATGGTGCTGACGCAGGTTGCATATGCTTCTGCGAATGTGCTTTACAAGCTCGCCATAAATGATGGAATGAGCATTAGGGTAGTCACTGCCTACCGTCACATTTTCGGTGCtgctttctctctttctcttgctCTTATTTTCGAAAGAAAGAACAGGCCAAAGTTGACATGGAGGGTGCTTTTGATGTCATTTCTTTGTGGCCTCTTTGGGGGGAGTTTATCGCAAAACCTTTATTTCATTGGTTTGGCTTGGGTATCAGCGACATTTGCTACCTCTGTTTATAATCTCATTCCTGTGATCACTTTTATCTTCTCCGTTTTGTGCGGctTCGAGAAGTTAAATTTGCGAACCGCAGCAGGGAGGGTCAAGGTGTTGGGACCGATAATAGGAATTAGTGGGTCAATGCTGCTGACATTTTTCAAAGGGGCAGAAATTAACATTTGGACCTTCCACATTAATCTTTTGCATAAAAATCACAATGGCCACATAGGGACATCGCACGCTGACTCTGGAAGAAAATGGCTAGGTGTTTTATGTGGTCTTGGAAGTGGCTTCAGTTTTTCAATATGGCTCATCATTCAGACTAAGATGAGTAAAGAATATCCAAGCCATCACTCAAGTACAGCGTTGATGACCTTAATGGGAGCAATACAAGCCACAGTCTTTGCCCTGTGTGTTGAGAAGGATTGGAGTCAATGGAAGTTGGGTTGGAATATTAGGCTTCTAACTGCGGCCTTTTCGGGAATTGTTGTCTCTGGATTAGTGGTTATTGTCACTGCATGGTGTGTACGGCTGAGAGGTCCATTGTATGCATCTGTTTTCAACCCTCTCTCGCTTGTGATAGTGGCTGTTTTTGCTTCCTTGGTGTTGGATGAAAACTTATATGTAGGAAGTGTAATTGGAGCAGTGCTAATTGTGTGTGGTTTGTACATAATGTTGTGGGGTAAGAGCAAAGAAATGAAAACGGCAACTCAATTGGTGTCATCCGACAACACTATCGGAGTTACTGAGGTTATTGTCGTGTCTACGGCAGACAATAGTGACTGCGGCAGCAATAGCCACATCAATGGTAATAGCAGCATTGTAACAAAGGCTCATGATGAATCTTCGGAAAATGGACATAAACTGGAAGACATTGAGAGAAACGGGGAAGAAGTGAAGTAG 1320 0.4167 MDSTVSLAWLGLRTSIYPFLSLFPSSNPNQLTTLSKDEYTWKVVQESKPALLMVLTQVAYASANVLYKLAINDGMSIRVVTAYRHIFGAAFSLSLALIFERKNRPKLTWRVLLMSFLCGLFGGSLSQNLYFIGLAWVSATFATSVYNLIPVITFIFSVLCGFEKLNLRTAAGRVKVLGPIIGISGSMLLTFFKGAEINIWTFHINLLHKNHNGHIGTSHADSGRKWLGVLCGLGSGFSFSIWLIIQTKMSKEYPSHHSSTALMTLMGAIQATVFALCVEKDWSQWKLGWNIRLLTAAFSGIVVSGLVVIVTAWCVRLRGPLYASVFNPLSLVIVAVFASLVLDENLYVGSVIGAVLIVCGLYIMLWGKSKEMKTATQLVSSDNTIGVTEVIVVSTADNSDCGSNSHINGNSSIVTKAHDESSENGHKLEDIERNGEEVK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1977 439 MobiDBLite consensus disorder prediction 415 439 - -
Ssu5g1977 439 Pfam EamA-like transporter family 49 177 IPR000620 GO:0016020|GO:0016021
Ssu5g1977 439 Pfam EamA-like transporter family 227 365 IPR000620 GO:0016020|GO:0016021
Ssu5g1977 439 MobiDBLite consensus disorder prediction 419 439 - -
Ssu5g1977 439 SUPERFAMILY Multidrug resistance efflux transporter EmrE 285 370 - -
Ssu5g1977 439 PANTHER WAT1-RELATED PROTEIN 47 389 IPR030184 GO:0016021|GO:0022857
Ssu5g1977 439 PANTHER WAT1-RELATED PROTEIN 47 389 - -
Ssu5g1977 439 SUPERFAMILY Multidrug resistance efflux transporter EmrE 83 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1977 Ssu-Chr5 57120116 57141882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1977 48 383 Nodulin-like Gene Family AT1G25270 42.857 5.59e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1977 - - var:108326689 552.362