Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1976 ATGGAAAGTAGTGCAAGAGTCGAAGCCAGCCTGCTGATGGTGCTGACGCAGCTTGCATATGCTTCTGCGAATGTGCTTTACAAGCTCGCCATAAATGATGGAATGAGCATTAGGGTAGTCACTGCCTACCGTCACATTTTCGGTGCtgctttctctctttctcttgctCTTATTTTCGAAAGAAAGAACAGGCCAAAGTTGACATGGAGAGTgcttttgatatcatttttttgCGGCCTATTTGGagGGAGTTTAGCTCAAAATCTTTATTTCATTGGCTTGGCTTGGGTCTCAGCGACATTTGCAACCTCCGTTTATATTCTCGTTCCTGCGATCACTTTTTTCTTCTCCGTCGTGTGCGGcttCGAGAAGTTAAATTTGCGAACCGCAGCAGGGAGCGTCAAGGTGTTGGGACCGATAATAGGAATTAGTGGTAAAAATCACAATGGCCACATAGGGACATCGCACGCTGACTCTGGAAGAAAATGGCTAGGTGTTTTATGTGGTCTTGGAAGTGGCTTCAGTTTTTCAATATGGCTCATCATTCAGGGAATTGTTGTCTCTGGATTAGTGGTTATTGTCACTGCATGGTGTGTACGGCTGAGAGGTCCATTGTATGCATCTGTTTTCAACCCTCTCTCGCTTGTGATAGTGGCTGTTTTTGCTTCCTTGGTGTTGGATGAAAACTTATATGTAGGAAGTGTAATTGGAGCAGTGCTAATTGTGTGTGGCTTGTACATGGTGCTGTGGGGCAAAAGCAAAGAAATGAGAACGGCCCCTCACTTGGTGTCATCAGACAACAAAAATTTTGAAGCGAATGCGGCTATTGTCATTGCGACAATGGATCATGACAGCAGTGACTGCGGCAACAATAGCCCCACCAGTagcaatataaatattgttacaATGGGTTCACGATGA 921 0.4245 MESSARVEASLLMVLTQLAYASANVLYKLAINDGMSIRVVTAYRHIFGAAFSLSLALIFERKNRPKLTWRVLLISFFCGLFGGSLAQNLYFIGLAWVSATFATSVYILVPAITFFFSVVCGFEKLNLRTAAGSVKVLGPIIGISGKNHNGHIGTSHADSGRKWLGVLCGLGSGFSFSIWLIIQGIVVSGLVVIVTAWCVRLRGPLYASVFNPLSLVIVAVFASLVLDENLYVGSVIGAVLIVCGLYMVLWGKSKEMRTAPHLVSSDNKNFEANAAIVIATMDHDSSDCGNNSPTSSNINIVTMGSR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1976 306 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 146 - -
Ssu5g1976 306 PANTHER WAT1-RELATED PROTEIN 184 278 IPR030184 GO:0016021|GO:0022857
Ssu5g1976 306 PANTHER WAT1-RELATED PROTEIN 9 145 IPR030184 GO:0016021|GO:0022857
Ssu5g1976 306 SUPERFAMILY Multidrug resistance efflux transporter EmrE 177 254 - -
Ssu5g1976 306 PANTHER WAT1-RELATED PROTEIN 184 278 - -
Ssu5g1976 306 PANTHER WAT1-RELATED PROTEIN 9 145 - -
Ssu5g1976 306 Pfam EamA-like transporter family 11 140 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1976 Ssu-Chr5 57113798 57115872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1976 13 298 Nodulin-like Gene Family AT1G25270 33.426 1.16e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1976 - - var:108326689 372.089