Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1974 ATGGACATTGGCAATGGGGAGGCTCAGAATGGTACAGAAAATGGGGAAAGAAAGATACTACTAGGAAGAAATATTCATACCATGTGCCTTGAAGTCACGGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAAGTGTGTTGGCTAGATACAGAAAATCTCTGACAGAAAGGACCAACTATCATTTAGGTTACCCCTATAATTTGGATTTTGATTATGGTGCACTCTCTCAACTTCAGCACTTTTCCATCAACAACCTGGGAGATCCGTTTATTGAAAGCAATTATGGTGTCCACTCCAGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTCGCGCAGTTGTGGGAACTGGAGAAAGATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTCTTCCCAGATGGGATTTTATATGCCTCACAGGAGTCACATTATTCTGTTTTCAAAGCTGCTCGTATGTACAGAATGGAACGTACTACTGTGAAAGGAGCTGTGGATGACCTTGATATGGTTATAAAGAAACTTGAAGAAGCAGGGTTTTCACATGATAGGTTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGTTGCCTTTTGTCAAACGTGCtccaaaaatttctttcaagaaGCCTATTGGCAGTGTTAGTGTTTCTGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGTGTGCAGATAACACGATTGGAGCATGTCAAGGCTCTTTCCAGGAACGTAGAATACCTTGCCTCTAGGGACGCCACAATCATTGGCAGCAGGAATGGTCATGCCCCCATATTCCTGTGGTATAGTTTAAACATGAAAGGGTACAGAGGTTTTCAGAAAGAAGTGCAGAAGTGCTTGCGCAATGCACACTACTTCAAAGATCGCCTTGTAGATGCTGGGATTGGAGCAATGCTCAATGAGCTTAGCAGCACCGTTGTGTTTGAGAGGCCACATAATGAGGAGTTTGTGCACAAGTGGCAGTTGGCATGCCAAGGGAACATTGCCCATGTTGTGGTGATGCCAAATGTCACCATAGAGAAACTTGATGATTTTCTGAATGAACTTGTGCAGAAGCGTGCTGTGTGGTTTCGAGATGGGAAGTCTCAACCTTATTGCATAGCTTCTGCTGTAGGCCACGAAAATTGTCTTTGTGCTCTGCATAGGTGA 1230 0.4431 MDIGNGEAQNGTENGERKILLGRNIHTMCLEVTEPDIDDEVTGEREAYMASVLARYRKSLTERTNYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFAQLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMERTTVKGAVDDLDMVIKKLEEAGFSHDRFYIHCDGALFGLMLPFVKRAPKISFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVKALSRNVEYLASRDATIIGSRNGHAPIFLWYSLNMKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHNEEFVHKWQLACQGNIAHVVVMPNVTIEKLDDFLNELVQKRAVWFRDGKSQPYCIASAVGHENCLCALHR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1974 409 Gene3D - 178 318 IPR015421 GO:0003824
Ssu5g1974 409 PANTHER - 3 175 - -
Ssu5g1974 409 Pfam Pyridoxal-dependent decarboxylase conserved domain 177 328 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ssu5g1974 409 PANTHER SERINE DECARBOXYLASE 177 409 - -
Ssu5g1974 409 SUPERFAMILY PLP-dependent transferases 56 378 IPR015424 -
Ssu5g1974 409 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 233 254 IPR021115 GO:0016831
Ssu5g1974 409 PANTHER SERINE DECARBOXYLASE 3 175 - -
Ssu5g1974 409 PANTHER - 177 409 - -
Ssu5g1974 409 Gene3D - 81 177 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1974 Ssu-Chr5 57047797 57050319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1974 177 315 Calmodulin-binding Proteins AT1G65960 26.351 1.44e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1974 K25193 - gmx:100792053 785.793