Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1973 ATGGCTAATGGTACACCCAATGGTTTGGTGCCACTCAACCACGCAGGAGCAGTACTTCCAAGTCCAGCAAACGGAATGGATCTGAAGCAAAGCCAAGTTACCGAAGATCAGACCAATTATTTACGAAGGGCTCAGTGGCTTCGTGCAGCGGTTCTAGGAGCCAATGATGGGTTGGTTTCAGTTTCTTCATTGATGATGGGTGTAGGAGCTGTTAAAAAAGATGTGAAGGCTATGTTACTTGCTGGTTTTGCAGGGTTAGTTGCAGGGGCTTGTGGCATGGCAATTGGAGAGTTTGTTTCTGTGTGCACTCAGTACGAAGTTGAGGTTGGTCAAATGAAGAGAGACATGAATATGAGTGTGGGAGGGGAGAAAGACTTGGAGATGGAGATGGAGAAAAGAACATTACCCAATCCATTGCAGGCTACTTTGGCATCCGGACTCTCCTTTTCTATTGGTGCATTGGTGCCTCTACTCTCAGCTGCTTTCATAGCAAATTACAAGATAAGGCTTGTTGTGGTTGTGGCAATGGCTAGCTTGACTTTGGTGGTCTTTGGAAGGGTAGTGGCTCAGCTGGGAAAAACTCCTACCATAAAATCTTGTATAAGGTTCCTTCTTGGAGGATGGTTAGCAATGGCCATCACCTTTGGGTTGACCAAATTACTGGGTGCTAGTGCTTTAGAATAA 684 0.4576 MANGTPNGLVPLNHAGAVLPSPANGMDLKQSQVTEDQTNYLRRAQWLRAAVLGANDGLVSVSSLMMGVGAVKKDVKAMLLAGFAGLVAGACGMAIGEFVSVCTQYEVEVGQMKRDMNMSVGGEKDLEMEMEKRTLPNPLQATLASGLSFSIGALVPLLSAAFIANYKIRLVVVVAMASLTLVVFGRVVAQLGKTPTIKSCIRFLLGGWLAMAITFGLTKLLGASALE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1973 227 Pfam VIT family 127 218 IPR008217 GO:0005384|GO:0030026
Ssu5g1973 227 Pfam VIT family 47 114 IPR008217 GO:0005384|GO:0030026
Ssu5g1973 227 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 1 223 - -
Ssu5g1973 227 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 1 223 IPR008217 GO:0005384|GO:0030026
Ssu5g1973 227 CDD Nodulin-21 45 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1973 Ssu-Chr5 57028402 57029085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1973 19 226 Nodulin-like Gene Family AT3G43660 58.173 1.15e-81 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1973 K22736 - gmx:100791523 335.88