Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1972 ATGGCCAACGTTGGAGCTAGAAGTAATGAAATTTCACCAAACCATGTTGAGATCCCTATCCATGCAAATGGTGTGGAGCCAAAACCAAGCCAGGAGGCCGAAGAAAGCAACATTATTGACTACTCTCAAAGGGCGCAGTGGCTTCGAGCAGCCGTGTTGGGAGCCAATGATGGGTTGGTTTCTGTTGCCTCACTGATGATGGGTGTTGGGGCTGTTAAGAAAGACGTAAGTGCCATGCTTGTTGCTGGTTTTGCTGGATTAGTTGCCGGGGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGTGTACACTCAGTATGACATACAGGTGACTCAGATTAAAAGAGAGAGGGAAGCTAATAACAATAGAGGAGTGGATGGAGAAGCTCAAAGAGAGAAGCTGCCAAACCCATTTCAAGCTGCACTAGCATCAGCACTGGCATTTTCTCTGGGTGCTTTGGTGCCACTGCTAGCTGCTGTGTTTATAAGGAGTCACAAGATTAGGATGGGAGTTGTTGTTGCTGCGGTTAGCTTGGCATTGTTGGTGTTTGGTGGGGTAGGAGCAGTGCTTGGAAAAACTCCAGTAAAGAGGTCTTGTGTCAGGGTGCTGATTGGAGGTTGGATGGCTATGGCTATAACATTTGGCCTCACCAAATTGATTGGCAGTGTTGGACTTTGA 678 0.4749 MANVGARSNEISPNHVEIPIHANGVEPKPSQEAEESNIIDYSQRAQWLRAAVLGANDGLVSVASLMMGVGAVKKDVSAMLVAGFAGLVAGACSMAIGEFVSVYTQYDIQVTQIKREREANNNRGVDGEAQREKLPNPFQAALASALAFSLGALVPLLAAVFIRSHKIRMGVVVAAVSLALLVFGGVGAVLGKTPVKRSCVRVLIGGWMAMAITFGLTKLIGSVGL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1972 225 Pfam VIT family 48 123 IPR008217 GO:0005384|GO:0030026
Ssu5g1972 225 Pfam VIT family 130 217 IPR008217 GO:0005384|GO:0030026
Ssu5g1972 225 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 6 222 - -
Ssu5g1972 225 MobiDBLite consensus disorder prediction 16 36 - -
Ssu5g1972 225 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 6 222 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1972 Ssu-Chr5 57025154 57025831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1972 32 225 Nodulin-like Gene Family AT3G43660 69.588 7.68e-96 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1972 K22736 - gmx:100790996 343.969