Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1971 ATGGCTTCTCTAGGCACTAGTAGCAATGAAATGCCAATTAACCATATCGAAATTCCCATACATTCTAATGATATAGAAGCAAAGCCTAGCCAAGACACTGACCAAAATCATATTGAATACTCTCAAAGGGCACAGTGGCTTCAGGCAGCTGTGTTGGGAGCCAAAAATGGGTTGGTCTCAGTCACCTTACTGATTATGGGTGTTGAAGCTTTGAACGAAGACATCACAACCATGCTTCTTACTGGCTTTGCAGGACTAGTTGCAGGGGCTTGCAGTGTGGCAATTGATGAGTTTTTATCTGTGGACACTCGGTTAAACACAGAGGAAGCTCAAATGAAAGTCCACACTAACAAACACAAAGAAGTGGAGGAAGTTGATAAATTGCTTAACCCTTTTCAGGGTTCCATAGCATCAACAATTGGATTTTCTATTGGTGCTGTGGTGCCACTGCTAGCAACTGTTTTTATAAGTGACTATAAAATCAGGCTACTGGTTGTTGTTGCTGTGACTATCTTGGCATTGTTGGTATTTGGAGGGGTAGGAGTAGTACTTGGTAAAAGTAAAACACCAGTGAGAAGGACTTGTGATAGTGCTGATTGGAGGTTGGATGACTATGGCTATTACTTTTGGCTTTGA 636 0.4182 MASLGTSSNEMPINHIEIPIHSNDIEAKPSQDTDQNHIEYSQRAQWLQAAVLGAKNGLVSVTLLIMGVEALNEDITTMLLTGFAGLVAGACSVAIDEFLSVDTRLNTEEAQMKVHTNKHKEVEEVDKLLNPFQGSIASTIGFSIGAVVPLLATVFISDYKIRLLVVVAVTILALLVFGGVGVVLGKSKTPVRRTCDSADWRLDDYGYYFWL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1971 211 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 3 195 IPR008217 GO:0005384|GO:0030026
Ssu5g1971 211 Pfam VIT family 113 192 IPR008217 GO:0005384|GO:0030026
Ssu5g1971 211 Pfam VIT family 47 124 IPR008217 GO:0005384|GO:0030026
Ssu5g1971 211 Coils Coil 105 125 - -
Ssu5g1971 211 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 3 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1971 Ssu-Chr5 57019076 57019711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1971 20 194 Nodulin-like Gene Family AT3G43660 49.432 1.23e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1971 K22736 - gmx:100527486 286.189