Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1969 ATGTCCGACATGGAAGAGTATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAAGTTAAAGGATACATTTGAGAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCATCTAGGGATGACGGTGATCGCTACCGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGCTGAAGGGGCCAGAGGGGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGCTGGTGGTCACTATGGTCCGGATAGAAATGCAGATCGTTCTTCAGGGGGGCGCAACAGGGATGCTGGTAATCATGGAGATTCTGGAAATGATCGATATTACCGTGATCGTGCAGGACCATATGAGCGACGGGGATCGGGAGGCTTTCGTTga 624 0.476 MSDMEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDRAQPQQGSSRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPAEGARGGRYGGRESRYGGSSAGGHYGPDRNADRSSGGRNRDAGNHGDSGNDRYYRDRAGPYERRGSGGFR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1969 207 Gene3D - 118 177 - -
Ssu5g1969 207 SUPERFAMILY Retrovirus zinc finger-like domains 114 140 IPR036875 GO:0003676|GO:0008270
Ssu5g1969 207 SUPERFAMILY RNA-binding domain, RBD 5 117 IPR035979 GO:0003676
Ssu5g1969 207 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Ssu5g1969 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Ssu5g1969 207 MobiDBLite consensus disorder prediction 76 122 - -
Ssu5g1969 207 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Ssu5g1969 207 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 167 - -
Ssu5g1969 207 MobiDBLite consensus disorder prediction 168 200 - -
Ssu5g1969 207 PANTHER TRANSFORMER-2-RELATED 1 167 - -
Ssu5g1969 207 MobiDBLite consensus disorder prediction 134 207 - -
Ssu5g1969 207 SMART rrm1_1 8 81 IPR000504 GO:0003723
Ssu5g1969 207 MobiDBLite consensus disorder prediction 88 111 - -
Ssu5g1969 207 Gene3D - 2 117 IPR012677 -
Ssu5g1969 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Ssu5g1969 207 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1969 Ssu-Chr5 57011159 57012077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1969 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 38.158 1.85e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1969 - - gmx:100815224 317.775