Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1963 ATGGTGAACGTTCCCAAGACAAAGAAGACATACTGCAAGAGCAAGGAGTGCAGGAAGCACACCCTCCACAAGGTCACCCAATACAAGAAGGGTAAGGACAGCATTGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCTGGTTACGGCGGACAGACCAAGCCCGTCTTCCACAAAAAGgccAAAACCACCAAGAAAATTGTGTTGAGGCTGCAGTGCCAGGGTTGCAAACACGTCTCCCAGCATCCTATCAAGAGGTGCAAGCACTTTGAGATCGGCGGTGACAAGAAGGGAAAAGGAACCTCGCTCTTCTAG 318 0.5063 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1963 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Ssu5g1963 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ssu5g1963 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Ssu5g1963 105 Gene3D - 1 105 - -
Ssu5g1963 105 MobiDBLite consensus disorder prediction 28 56 - -
Ssu5g1963 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Ssu5g1963 105 MobiDBLite consensus disorder prediction 28 48 - -
Ssu5g1963 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1963 Ssu-Chr5 56943974 56944554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1963 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 3.88e-68 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1963 K02929 - egr:104421613 224.172