Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1962 ATGGAGGAGTTATCTCAGAACCAGACTATTGTTGTCCATGGGATTACTGGTGCTGGGTCAGTGGCTTTAGCTACCGGTTTCACGTATCCCCTTGACACCATCAAAGTCCTCACCCAGGTTGGTTCCAGTGCCGGTAAAGAATTGGACGCTGCCCAGGCTTTGATGAGAGTACTCTCTCTGTCCGGTAATGCAGGTTTGTTCAATGGTTTTGGCTGGTTGGCAGTTGGAAGGATTTTTGGTCTGGGAGCACGATTTGGGGTTTATGAAATCCTTACAGCCTTTTACAAAGATGGTCGGGAAGATAATTATTTGTTTGCTTCTGAGGCTCTTTTGGCTGGCATGGTAGCTGGTGCCGTTGAGACATTCATAAGCTCTCCATTCGAACTCATCAAGCTTCGTATGCAGGTTCCTGCTGCTTCGTATGTTCCAAGCTCCAACTTTGCTTTGGAAAAGGGGGCTCGGACAGCTTTAATTACAAGATCACTTTATGGCTGTTATCCAGACAAGAGGTCCTTGAACCAATATGTTGGTCTCATCTCCACCCtaacaacaaaaaatactaATGTGACCAGTGCTTTACTGGAGTATCCATGGACAATGACAGGATCTGGGAGGCCACCATCAGTTTGCAATGTCAGGAGACCATCAGATATTATATCTTTGGAAGGATGGAGCACATTATGGAGAGGTCTCCGTTCTGGAATTGTTCGAGATTCTGTGTTTGGTGGCATATTCTTTTCAACCTGGCAATTTCTGCACCAAGCAATGCTAGATTGGAAGGCTGTAGGAATGAATCCTCCACCCAGGTTAAATGAAGAAGTCGGTCCATTGTCTCCTTTGACTGTTAGTCTTACTGCTGGATTCTCAGCTTCAGTTGCTGGCGCTGCTTCCCATGGTTTTGATACTACAAGAAGTAGATCACAATGTACTGTGGTGCCAAAGTACATCTCAATGGAGAGAAAGCTTCTGAAGTGGAAACAACCAGGAAACAAGTTTGAAAGAATTACTGGGATCCATCCTTCTGACAGAAATGTCTTGCTCCGTGGTATTGGTTGGCGGATGGCTCGCTCTGGGTTGGCATCATTCATGATCGTAGGAAGTTATTTCTTTGTTGCTGATCATCTTGCTTCTAGTTTGACTTAA 1143 0.4479 MEELSQNQTIVVHGITGAGSVALATGFTYPLDTIKVLTQVGSSAGKELDAAQALMRVLSLSGNAGLFNGFGWLAVGRIFGLGARFGVYEILTAFYKDGREDNYLFASEALLAGMVAGAVETFISSPFELIKLRMQVPAASYVPSSNFALEKGARTALITRSLYGCYPDKRSLNQYVGLISTLTTKNTNVTSALLEYPWTMTGSGRPPSVCNVRRPSDIISLEGWSTLWRGLRSGIVRDSVFGGIFFSTWQFLHQAMLDWKAVGMNPPPRLNEEVGPLSPLTVSLTAGFSASVAGAASHGFDTTRSRSQCTVVPKYISMERKLLKWKQPGNKFERITGIHPSDRNVLLRGIGWRMARSGLASFMIVGSYFFVADHLASSLT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1962 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 101 255 IPR018108 -
Ssu5g1962 380 SUPERFAMILY Mitochondrial carrier 9 360 IPR023395 -
Ssu5g1962 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 94 IPR018108 -
Ssu5g1962 380 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 376 - -
Ssu5g1962 380 Gene3D Mitochondrial carrier domain 10 378 IPR023395 -
Ssu5g1962 380 PANTHER CARRIER PROTEIN 4 376 - -
Ssu5g1962 380 Pfam Mitochondrial carrier protein 108 256 IPR018108 -
Ssu5g1962 380 Pfam Mitochondrial carrier protein 8 96 IPR018108 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1962 29 258 Antiporters AT1G79900 22.814 4.82e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1962 - - gmx:100813634 660.218