Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1961 ATGGGAGATAATAACAATGTCAACCTCCCACCCGGGTTTCGCTTTTATCCCACGGATGAAGAGCTTGTAGTTCATTTCCTTCAAAGAAAGGCAAATCTTCTACCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGACCCTTGGGAACTTCATgGTAGAGCTTTGGCTGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTAGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACATGAGAGTTGGCATCAAGAAATATTATGTGTTCCATGTGGGGGAAGCCCCTGATGGTAACACAACCAATTGGATAATGCAAGAGTATCGTTTATTAGATTCTGCTTCCTCTAGCAGATCATCCAGAAGAAGAGCACAACCAAAACCGGACCATAATAAATGGGTGATATGTCGAGTTTATGAGCGCGATAacgatgatgatggtggtgatggaACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGACGATCTTGACGAAATAAGTTTGCCAAATTAG 576 0.4097 MGDNNNVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTSNGYWMPMGMEEPVITSSSNMRVGIKKYYVFHVGEAPDGNTTNWIMQEYRLLDSASSSRSSRRRAQPKPDHNKWVICRVYERDNDDDGGDGTELSCLDEVFLSLDDLDEISLPN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1961 191 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Ssu5g1961 191 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Ssu5g1961 191 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 6 188 - -
Ssu5g1961 191 Pfam No apical meristem (NAM) protein 10 128 IPR003441 GO:0003677|GO:0006355
Ssu5g1961 191 SUPERFAMILY NAC domain 6 158 IPR036093 GO:0003677|GO:0006355
Ssu5g1961 191 PANTHER NAC TRANSCRIPTION FACTOR 56 6 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1961 Ssu-Chr5 56930712 56931556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1961 7 161 NAC Transcription Factor Family AT1G52890 44.785 9.16e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g1961 NAM 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1961 - - gmx:100788893 378.252