Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1958 ATGGAAAGTGCGTGGAACACCAGCAAGATGAAGGTCCTGAATTCGAGGACTTTGGACGAAAACGTTCCACCATTGCAGATCGATTTGGACGACAAAAGAGGACGCTATCTCCAACCAACCACGATGAGTCCACGGTTTCAACGGTACGCCGAGAACATCGACGTCAGCTCGCCGCTCGCGCGCTACCTCTTCACCGGATCTCCTCTTTCCGGCAAGGTCGTCGCCGCCGGCGAGGCCTTCACTCCTCCGACTTTCGGCGCCAGCAAGTACAGGACCGCGAAGGCACAGCAGTACTGCGGCAACAGTTCGGGGAGCAGTAGCTTCGGTTCTCGCGGTAGGATTTCGCCCTCGCCGCTATCGTCAATTGAGAACGTGGAGATCGCGTCGCTCATGTCGCCGCCGATGTACAGAACGCCGGCGACGGGGGACGACGATGTCATCGTGATGGATGACATTCTGGTGAGGCCAGTCTCCGGAGGAAAGAGCGGAAGGTCTTCATCTTCCTCAGGTCGTGGTTCGTCCTCCTCGTCGTCGACCTCGAAGAGCGTGTTCAAGACGGAGATTTGCAGAGCGTGGGAAGAATCTGGAAACTGCCGCTACAACTCCAAATGCCAGTTTGCACACGGAAAAGAGGAGCTTCATACAGGTCGTCTCTCCACGAAAAGCAAATCTGGGGCACAGACATGCAGCAAATCATCTATTAGAGCAGGATCAAGCACGCATGGCCCAAGCAGCCGCAATGTTCATCAGCAGAATGCAGCAGCTGAACCTGATCATGAAGTCACAACATCCCAACCAACTTCACCCGAACCTAATCATACCCTTACCAATTCCAACACTTCCAATGACTGGTCACCCCTGGATGATGGTATTGAGGTTGTCCTCCCAAATGGTTCAGATAAAGCTCCATCAAGGGAAGAAGTTGATGCATACATTTCCAGTATGGGAAATAGCTGGACTGCTAAAAGGAGACTACCAGTATTTGCAGCACTTTGTAAGGGGGATTGA 1008 0.5317 MESAWNTSKMKVLNSRTLDENVPPLQIDLDDKRGRYLQPTTMSPRFQRYAENIDVSSPLARYLFTGSPLSGKVVAAGEAFTPPTFGASKYRTAKAQQYCGNSSGSSSFGSRGRISPSPLSSIENVEIASLMSPPMYRTPATGDDDVIVMDDILVRPVSGGKSGRSSSSSGRGSSSSSSTSKSVFKTEICRAWEESGNCRYNSKCQFAHGKEELHTGRLSTKSKSGAQTCSKSSIRAGSSTHGPSSRNVHQQNAAAEPDHEVTTSQPTSPEPNHTLTNSNTSNDWSPLDDGIEVVLPNGSDKAPSREEVDAYISSMGNSWTAKRRLPVFAALCKGD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1958 335 MobiDBLite consensus disorder prediction 215 305 - -
Ssu5g1958 335 SUPERFAMILY CCCH zinc finger 182 214 IPR036855 GO:0046872
Ssu5g1958 335 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Ssu5g1958 335 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 1 331 - -
Ssu5g1958 335 MobiDBLite consensus disorder prediction 157 180 - -
Ssu5g1958 335 Gene3D - 175 215 - -
Ssu5g1958 335 MobiDBLite consensus disorder prediction 160 180 - -
Ssu5g1958 335 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Ssu5g1958 335 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 331 IPR045877 GO:0003729
Ssu5g1958 335 MobiDBLite consensus disorder prediction 219 286 - -
Ssu5g1958 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 210 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1958 185 213 C3H Transcription Factor Family AT1G68200 58.621 2.32e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu5g1958 zf-CCCH 3.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1958 K18753 - gmx:102665928 374.785