Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1954 ATGGGCAACATGGAGCTAGTGATTTCATCtttcatgtgtttgtttcttTGGGTTTTTTTGGGGCTTGACTTAATGCTCAAGGTTTCTGGCAATCCAGAAGGTGATGCCCTGACTGCATTAAAGAACAGTATGGCTGATGATCCTAACAATGCTCTTCAAAATTGGGATTCTAGCCTTGTCAATCCTTGCACATGGCTTCATGTTACTTGCAACAATGAAAATAGTGTGATCCGTGTGGAACTTTCTAAGAATAATATAACTGGAAAAATCCCAGAAGAGCTTGGAAGTTTGACAAACTTGGTGAGCTTGAATCTTTACATGAACAGCATTACTGGCTCCATTCCGGACAAATTGGCCAACCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGAAAAATTCCTATGCTTTTGACCACTGTTAATTCACTGCAAGTGCTTGATTTATCGAACAACAACTTAACAGGAGATGTCCCGATCAATggttcattttcaatttttactcCCATCAGTTTTAGGAATAATCGTTTCTTGAATAATATTACTCTATCTCCACCAGCTGCTACACCGCCACCAAGTTCTTCAGGTAATGATAACCGTGCTATTGGAGCCATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCGGCCCCTGTACTTGCACTTGTTTATTGGAGAAGAAGGAAGCCACAGGATTATTTCTTTGATGTTGCAGCTGAAGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTTCACTGCGTGAACTGCAAGTTTCAACAGATAGCTTCAATAACAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACCCAGGGTGGGGAGATGCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGCATGGTTTTTGTATGACAACTACTGAACGCTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGACCGTCCAGAATCACGACCACCACTTGAATGGCCAAAACGGAAGCGTATTGCTTTGGGAGCTGCTAGGGGGATTGCTTATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATTTTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAGATACTCATGTTACTACTGCTGTACGCGGTACTATTGGCCATATAGCACCAGAGTACCTATCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGACTCGCCAACGATGATGATGTCATGTTGCTTGATTGGGTGAAAGCACTTCTGAAAGACAAGAGGTTGGAGACACTGGTGGATGCAGATTTAGAGGGAAATTATGAGGAGGGGGAAGTAGAGGAGCTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTATGGAAAGACCCAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGATAAATGGTGGCAGAAAGAGGATATGATCCGACAAAATTTCGACCCCTCCAATCTCCCAACTTCTTATTGGCCATTATTAGACTCAGCTTCAAGTATTCCACCAGATGAACTGTCAGGTCCTAGATGA 1791 0.4154 MGNMELVISSFMCLFLWVFLGLDLMLKVSGNPEGDALTALKNSMADDPNNALQNWDSSLVNPCTWLHVTCNNENSVIRVELSKNNITGKIPEELGSLTNLVSLNLYMNSITGSIPDKLANLKKLRFLRLNNNSLSGKIPMLLTTVNSLQVLDLSNNNLTGDVPINGSFSIFTPISFRNNRFLNNITLSPPAATPPPSSSGNDNRAIGAIAGGVAVGAALLFAAPVLALVYWRRRKPQDYFFDVAAEEDPEVHLGQLKKFSLRELQVSTDSFNNKNILGKGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTTTERLLVYPFMVNGSVASCLRDRPESRPPLEWPKRKRIALGAARGIAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKDKRLETLVDADLEGNYEEGEVEELIQVALLCTQSSPMERPKMSEVVRMLEGEGLAEKWDKWWQKEDMIRQNFDPSNLPTSYWPLLDSASSIPPDELSGPR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1954 596 Gene3D Phosphorylase Kinase; domain 1 240 347 - -
Ssu5g1954 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 394 406 IPR008271 GO:0004672|GO:0006468
Ssu5g1954 596 Gene3D Transferase(Phosphotransferase) domain 1 348 566 - -
Ssu5g1954 596 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 82 - -
Ssu5g1954 596 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 80 596 - -
Ssu5g1954 596 SUPERFAMILY L domain-like 35 182 - -
Ssu5g1954 596 PANTHER BNAA08G11770D PROTEIN 12 82 IPR031048 GO:0004675|GO:0005102|GO:0006468
Ssu5g1954 596 SUPERFAMILY Protein kinase-like (PK-like) 251 546 IPR011009 -
Ssu5g1954 596 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Ssu5g1954 596 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Ssu5g1954 596 ProSiteProfiles Protein kinase domain profile. 271 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1954 596 SMART serkin_6 271 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1954 596 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Ssu5g1954 596 Pfam Protein kinase domain 272 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1954 596 PANTHER BNAA08G11770D PROTEIN 80 596 IPR031048 GO:0004675|GO:0005102|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1954 Ssu-Chr5 56760901 56795896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1954 15 596 Receptor kinase-like Gene Family AT4G33430 68.702 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu5g1954 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1954 K13416 - gmx:100804180 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1954 5 56760901 56795896 Ssu1g0167 1 4491207 4492998 PCT