Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1951 ATGGATGTTTTATCCTTAAGCTCAAGTTCAAGCCTGAGCATTTCCAAGCCCTTTCAATTTCACGGCCTCCCACTCTCAAGTAAACAGCAGAGAGCTTCTCAGGTGCAGTTTGGTACTGTTTCATGCAGAGCCGCAACCCAAGAAAACTTGTACAAAATATTGTCTGTGAGTCCGGGAAGTGCAACAACGGACGAGATTAAGAGGGCTTATAGATCAATGGCTCTTCAGTACCATCCTGATGTGTGTCATGATCCTTCCATGAAAGAGGAGTCATCGAGGATGTTTGTTCAGCTAAACGCAGCTTACACGACCTTGTCCAATCCAAGGCTTCGTGCACAGTACGACAGTGCATTGGGTTTGAGAAGCAAAGTGAGTAGTGTTAGTGATGATCATGAGATATGGGGAAGTAGGTTGCAGGAGGAAGGGATTGACTTGAAGACAAGGTCTCGTAGACGTGTGGGACAAAAAGGGGGATCATCGGGTACCAGAATGAGGACACAAAACATGAGAGACAGGAGTTAA 522 0.4598 MDVLSLSSSSSLSISKPFQFHGLPLSSKQQRASQVQFGTVSCRAATQENLYKILSVSPGSATTDEIKRAYRSMALQYHPDVCHDPSMKEESSRMFVQLNAAYTTLSNPRLRAQYDSALGLRSKVSSVSDDHEIWGSRLQEEGIDLKTRSRRRVGQKGGSSGTRMRTQNMRDRS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1951 173 MobiDBLite consensus disorder prediction 140 173 - -
Ssu5g1951 173 SMART dnaj_3 48 110 IPR001623 -
Ssu5g1951 173 Pfam DnaJ domain 49 115 IPR001623 -
Ssu5g1951 173 Gene3D DnaJ domain 36 133 IPR036869 -
Ssu5g1951 173 PRINTS DnaJ domain signature 52 70 IPR001623 -
Ssu5g1951 173 PRINTS DnaJ domain signature 70 85 IPR001623 -
Ssu5g1951 173 PRINTS DnaJ domain signature 90 110 IPR001623 -
Ssu5g1951 173 CDD DnaJ 49 107 IPR001623 -
Ssu5g1951 173 ProSiteProfiles dnaJ domain profile. 49 118 IPR001623 -
Ssu5g1951 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 5 172 - -
Ssu5g1951 173 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 5 172 - -
Ssu5g1951 173 SUPERFAMILY Chaperone J-domain 27 114 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1951 Ssu-Chr5 56729021 56729542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1951 51 116 C2H2 Transcription Factor Family AT1G74250 41.176 5.70e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1951 - - gmx:100811478 258.84