Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1949 ATGGCAGATGCAACATCTGGTTCTGTGTTAAATGGGTTTGGATCTCATTTTTTATGTGGAGGAAAGAAGAGCCAGGCCCTGTTAGCTGCTGGCATTGGAGGCAAAGTTGGTGCTGCTGTTAGTACTAAAAGAGTTATTGTGGCAATTGATGTTGCACCAAAGAAGTCATGGATCCATGCTATAAAAGGAGGTGGAAATTTCATTGACCTAGAATGGCTTGATGGCTCGCTATCAGGTGACTATGGTTTTGACGCACTAGGACTAGGAAAGGACCCAGCATTCCTCAAATGGTATAGAGAAGCTGAACTCATTCATGGGAGGTGGGCAATGGCTGCAGTTGTAGGCATCTTTGTTGGATAG 360 0.4472 MADATSGSVLNGFGSHFLCGGKKSQALLAAGIGGKVGAAVSTKRVIVAIDVAPKKSWIHAIKGGGNFIDLEWLDGSLSGDYGFDALGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1949 119 Gene3D Chlorophyll a/b binding protein domain 68 119 - -
Ssu5g1949 119 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 119 IPR001344 GO:0009765|GO:0016020
Ssu5g1949 119 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 119 - -
Ssu5g1949 119 SUPERFAMILY Chlorophyll a-b binding protein 71 118 - -
Ssu5g1949 119 Pfam Chlorophyll A-B binding protein 71 118 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1949 Ssu-Chr5 56698337 56699011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1949 1 119 Chloroplast and Mitochondria Gene Families AT1G15820 71.074 1.58e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1949 K08917 - gmx:100783223 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1949 5 56698337 56699011 Ssu1g0176 1 4663178 4664495 PCT