Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1948 ATGGACTTCTGCAACACGGATTCTCAATCAGTGGAATGGGACACCTTATGGTCAAGAACTGTTGAGAACTTTGACAATGCTACTGGTGACCAGGACTACCCTGGAAGCAAATTCTTTGACCTTCTGGGATTTGCTGGAATAATCAGGGATGGTGTTTACATTCCAAATACAGAGAAGCCTGAGATACTAAAATTGACTGAGATTAAGCATGCTAGAATTGCAATGTTGGCTATGCTGATTTTTTACTTTGAGGCTGGATAG 261 0.4138 MDFCNTDSQSVEWDTLWSRTVENFDNATGDQDYPGSKFFDLLGFAGIIRDGVYIPNTEKPEILKLTEIKHARIAMLAMLIFYFEAG 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1948 86 SUPERFAMILY Chlorophyll a-b binding protein 29 80 - -
Ssu5g1948 86 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 86 IPR001344 GO:0009765|GO:0016020
Ssu5g1948 86 Gene3D Chlorophyll a/b binding protein domain 5 86 - -
Ssu5g1948 86 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 86 - -
Ssu5g1948 86 Pfam Chlorophyll A-B binding protein 20 85 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1948 Ssu-Chr5 56697954 56698214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1948 1 86 Chloroplast and Mitochondria Gene Families AT1G15820 70.930 1.11e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1948 K08917 - gmx:100527463 138.658