Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1936 ATGTCTCACTTTGGACGCTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTCCTCGTTCTCAATATCACCTTCCGTACTACCGCCGACGACCTATTCCCTCTCTTTGACAAGTACGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGAACCGGTGAGTCGAGGGGTTTTGCGTTTGTGCGTTACAAGTATGCTGATGAGGCTCAAAAGGCCGTTGAAAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAGAGGATTCACAAGGGAAGGATTATTGAAACAGCCCAGAGATCAAGGCACCGGTCACGGAGCCGCAGTCCCAAGAAGAGGTATCGTGATGATTACAAAGACCGGGATTATAGGAGGAGAAGCCGCAGCAGAAGCTATGAAAGGTATGAACGTGACAGGCACCGTGGGAGAGACAAAGATTATCGTCGCAGAAGCAGGAGCCGTAGTACCAGTCTTGATTACAAGGGTCGTGGGAGGGGACACTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCTTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAAAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCACGATGGTCGTTCTCCTACCCCTCGCAGTGTCTCACCACGCAGTCGCCCTGATGCTTCGCGAAGCCCTTCCCCTCGAAATTCAAATGGTGATCTGACTGTTGCTGCCCTTTTTGCTGGGTTTGGGTTGGCAATGGTATTAGCGGTTGGTACTGATGATGGCTGTCTAGCTGTGCTGCTGGTTTCTGTTGATTCCAAAGCCGCGTGA 915 0.5235 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRHRSRSRSPKKRYRDDYKDRDYRRRSRSRSYERYERDRHRGRDKDYRRRSRSRSTSLDYKGRGRGHYDDERHSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSHDGRSPTPRSVSPRSRPDASRSPSPRNSNGDLTVAALFAGFGLAMVLAVGTDDGCLAVLLVSVDSKAA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1936 304 MobiDBLite consensus disorder prediction 197 229 - -
Ssu5g1936 304 MobiDBLite consensus disorder prediction 123 196 - -
Ssu5g1936 304 MobiDBLite consensus disorder prediction 236 266 - -
Ssu5g1936 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Ssu5g1936 304 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 267 - -
Ssu5g1936 304 SMART rrm2_1 17 90 IPR003954 GO:0003676
Ssu5g1936 304 MobiDBLite consensus disorder prediction 102 266 - -
Ssu5g1936 304 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 267 - -
Ssu5g1936 304 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Ssu5g1936 304 SMART rrm1_1 17 90 IPR000504 GO:0003723
Ssu5g1936 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Ssu5g1936 304 Gene3D - 4 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1936 Ssu-Chr5 56536202 56540156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1936 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 6.78e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1936 K12891 - gmx:100778928 310.071