Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1933 ATGGATTCTGCGTTCTCCGTCACCACCACGGCGCACATGGCGCTTTTCAGAGCGCTCCACCGTCACTTTGCCGCAGCTCCTCCACGCGCCTTCCTCCGCCGCAAACTCAGATGCGTCGTTGCTTCTTACAACAACTGCTGCCGCATTCCGTGTTCTCCCGCTTCCGCGCCGTCGCCGCCCTCGGTCGGCTCCTTCTGTGGACTGCTGCCGCGAACGCCGTGCCGTCTGCTCTGCATTTCGAGCTCCGCCGCTTCTTTCGCCGGCGGTGGAAATGGAGGCGCTGGAACTGGCGACGGTGGCGGAGATGGCGGTTCTGGCGGCGAGTCTGGAGATGCTAATCTCAAACTGGTTGGAGACGCGGCTCAGGAGCTTTCGGCACTTTCGCCTGATGGAATGGTGTGCGGGGGATGTGCGGCGAATGTGAAAAGGATCCTGGAAAGTCAACCACAGGTGTCATCTGCTAGTGTAAATTTAACAACAGAGACAGCAATAGTTTGGCCAGTATCTGAAGCAAAAAATGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACTAGCTGTGGTTATAATTCCAGCCTTCGAGACTCAACAAGAGATAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAACGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGgccatttctctcatttctttgcAGCAAAGGCACCATGGATTCATGCGTTTCATTCCATTGGGTTTCATCTATCCTTGTCTTTGTTTACGTTGCTTGGTCCTGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTCTTAAAAGGACACCAAACATGAATACCTTAGTTGGTCTTGGGGCTTTATCATCATTTACAGTCAGTTCATTTGCTGCCTTGCTgccaaaattgGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTCTTGTTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTTTATTGCCACCAAAAGCTCGCCTTCTAGTGAACAATGGGGAAACAGAGGTTGGCTCGGTTGTTGAAGTTCCTTCTGACAGCCTTTCTGTTGGAGACCAAATTATTGTATTACCTGGAGACCGTATTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTATAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTACCTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAATGGAAGTGCGGAGACCAGGTGGTGAGAGTGCTATGGGAGACATTGTTCGTCTAGTTGAAGAGGCACAAAGTAGGGAGGCTCCTGTACAGCGGTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTGATGGCAGCATCTGCTGCCACATTCACATTCTGGAGTCTGTATGGCACACACATTTTACCTCCTGCATTATATCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTCCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACTTCTTTGGGGGCTAAAAGAGGATTACTTCTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCACGGTAAACAATGTTGTGTTTGACAAAACAGGGACCCTCACGGTTGGTAGACCTGTTGTGACAAACATTGTCACTCCTACATgcataaaaaatgcaatttcaaGCCAAACTGAAGAAAATGCTTTGTCTGATGTTGAAGTTCTAAGGTTAGCAGCTGCAGTAGAATCAAATTCAGTACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTCAGGCTGTTAATTGTCATAATGCTAAGCAAAATTTACAGGCAACAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCAGTGGCAACAATTGATAGCAAAAAGGTTTCTGTTGGGACATTGGAATGGATTACCAGGCATGGAGTTATTAACAGTATACATCAAGAGGTGGAGAAGCATAATAACCAATCCTTTGTCTATGTTGGAGTTGATGATACTTTAGCTggcctaatttattttgaagatgAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGACTGTCAAAGCAAAATATAGGTGTATACATGCTATCAGGAGACAAGAGGAATGCCGCTGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGAGAAGGTGCTATCTGGAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACagaaagataataataacatcGTAGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCACTGGCTTCTTCACATATTGGTATTGCATTAGGTGGAGGTGTTGGGGCTGCTAGTGAGGTGTCTTCTATCGTATTAATGCGCAACCAGCTCTCACAGCTAGTTGATGCCTTGGAGCTTAGCAGGCTGACCATGAATACTGTAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCGTAATGACTAACTCGTTACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATACATAGCACATCGCCAAAGACCAAAATCCATGTGGATTCTGATCTGGCACAACAAAACTGGAAAACAAACCACCCTTATTAG 2814 0.4474 MDSAFSVTTTAHMALFRALHRHFAAAPPRAFLRRKLRCVVASYNNCCRIPCSPASAPSPPSVGSFCGLLPRTPCRLLCISSSAASFAGGGNGGAGTGDGGGDGGSGGESGDANLKLVGDAAQELSALSPDGMVCGGCAANVKRILESQPQVSSASVNLTTETAIVWPVSEAKNAPNWQKQLGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHAFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKRTPNMNTLVGLGALSSFTVSSFAALLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPPKARLLVNNGETEVGSVVEVPSDSLSVGDQIIVLPGDRIPADGVVRAGRSTIDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTMEVRRPGGESAMGDIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGTHILPPALYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFATVNNVVFDKTGTLTVGRPVVTNIVTPTCIKNAISSQTEENALSDVEVLRLAAAVESNSVHPVGKAIVDAAQAVNCHNAKQNLQATDGTFLEEPGSGAVATIDSKKVSVGTLEWITRHGVINSIHQEVEKHNNQSFVYVGVDDTLAGLIYFEDEIREDARDVVDRLSKQNIGVYMLSGDKRNAAEHVASLVGIPKEKVLSGVKPDEKKKFINELQKDNNNIVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTVLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQIHSTSPKTKIHVDSDLAQQNWKTNHPY 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1933 937 SUPERFAMILY Calcium ATPase, transduction domain A 374 462 IPR008250 -
Ssu5g1933 937 ProSiteProfiles Heavy-metal-associated domain profile. 124 198 IPR006121 GO:0046872
Ssu5g1933 937 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 293 900 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu5g1933 937 Gene3D - 127 201 - -
Ssu5g1933 937 PRINTS P-type cation-transporting ATPase superfamily signature 713 724 - -
Ssu5g1933 937 PRINTS P-type cation-transporting ATPase superfamily signature 814 826 - -
Ssu5g1933 937 PRINTS P-type cation-transporting ATPase superfamily signature 791 810 - -
Ssu5g1933 937 PRINTS P-type cation-transporting ATPase superfamily signature 412 426 - -
Ssu5g1933 937 PRINTS P-type cation-transporting ATPase superfamily signature 573 587 - -
Ssu5g1933 937 PRINTS P-type cation-transporting ATPase superfamily signature 735 745 - -
Ssu5g1933 937 Pfam E1-E2 ATPase 357 553 - -
Ssu5g1933 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 331 594 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g1933 937 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 661 870 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g1933 937 CDD P-type_ATPase_HM 228 899 - -
Ssu5g1933 937 Gene3D - 584 721 IPR023299 GO:0000166
Ssu5g1933 937 CDD HMA 130 194 IPR006121 GO:0046872
Ssu5g1933 937 SUPERFAMILY Calcium ATPase, transmembrane domain M 324 873 IPR023298 -
Ssu5g1933 937 Pfam Heavy-metal-associated domain 130 194 IPR006121 GO:0046872
Ssu5g1933 937 Pfam haloacid dehalogenase-like hydrolase 569 803 - -
Ssu5g1933 937 SFLD p-type atpase 556 841 IPR044492 -
Ssu5g1933 937 ProSitePatterns E1-E2 ATPases phosphorylation site. 575 581 IPR018303 -
Ssu5g1933 937 Gene3D - 343 466 - -
Ssu5g1933 937 PANTHER ATP7, ISOFORM B 126 902 - -
Ssu5g1933 937 SUPERFAMILY HAD-like 572 897 IPR036412 -
Ssu5g1933 937 Gene3D - 564 841 IPR023214 -
Ssu5g1933 937 SFLD C1.7: P-type atpase like 556 841 - -
Ssu5g1933 937 SUPERFAMILY HMA, heavy metal-associated domain 128 196 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1933 Ssu-Chr5 56488306 56513760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1933 275 901 Primary Pumps ATPases AT1G63440 39.191 3.01e-122 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1933 K17686 - gmx:100796210 1560.04