Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1929 ATGGCGGAGCGTGCTTCTTACGGATTGGGACCTCGATTagATATTCAGCAATTACAACTTGAAGCCCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGCAATTGTCGGTTGTTTCAAATCACATCAGAACCACCTAACAGGCCACCAAGCggttccctttttctttttgatcgGAAGGTTTTAAGGTACTTTAGAAAGGATGGACATAattggagaaagaaaaaggatggaAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCatggagaagaaaatgaaaattttcagagGCGAAGCTATTGGATGCTTGAACCGGACATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAAACCAATATTGGTGGAAAAGCATATACTGATGAGGCTACATCAGATTCCCAGGAGGGCAGTTCTTTGTCATCTGGCTTTCCCAGAAATTATGGTAGGGTGCCTTCAGGAAGTACAGATTCCATGAGCCCAACCAGCACTTTGACATCTCTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATTACAACCTTATCATGAATCACGAAATTTGGGGAATGATCGTCCAATGGGTGATCGTGGACAGTTATCAATTTCTGGAAAAGAATATATCCCACTTGTTCAGGGGGATAAGTCTAGAGCTAGTGATGCTACTTACATTGAGGGTCAGAGAGAACATGGGATTGCATCCTGGGACAATGCCATGGAACAGTCTGCAGGAAAGTATACCGATCCTTCTCTTGTATCATCTATATCCATCCCATCAAGTGCATTGGGAAACGTCCTTGAAGAGTACCATACTGTTCCAGGCAACCTTTTAGAGCGTAGGAATGACCTCACTGAAGAGGAAAGGGGCTCTCAGCCTGTTCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAAGTGGGGCTTTACCCAATCATTGGGTTTGGAATTTGGCTCTGATTATGGTGCTAGTTTACTGGGGGATGTAACTAATAATGCAAGTCCAGATATTGTTCCTGAGCTGTTCACTTTTAATGGTGAGCCAAAAGAGCAGTCTGTGGACCAAAACTTCTCAAAGCAGTATACACATGCACAATCTCAACCTGCAGTGAAATCCAATTCTGACTATGAAGTTCCTGGCGAAGCAAGTATGAACTATGCATTGACCATGAAGCGTGGATTATTGGATGGAGAGGAGAGCCTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTACTAAAGAACTTGCTGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGACTGTGGGGATGTGATAGATGATACCTCATTGAACCTGTCCCTGTCTCAAGACCAGCTGTTTAGCATAAACGATTTTTCACCTAAATGGGCTTTTGCTGAGTCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTGAGGCGGCAACATGCAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTACGTAACATGTTCTAATAGGTTTGCTTGTAGCGAAGTTCGGGAATTTGAGTACAGAGAGGGATTTGATAGAAACAtagattttgcagattttttTAACAGTTTAACTGAAATGGATCTTCATTTGCAACTGGTGGGGTTACTTTCTTTAAACTCAGTGCACACTTTGAATCAAGtgtttgaggatgatatggagaaaagaaacttaattttcAGTCTTATTTTGCTGAAAGAGGAAGAGGAATATTCAAGTAAGGACGAGACAACTGTAGAGATGGATGTATCAAAAGACAAGTTGAAGGAGCATATGTTTTACAAGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCCCTTGTATTAGGTGAGGAGGGGCAAGGCGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAAAACCAATCATGACTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCTGTCCTTGTCTCAATGGGTGCAGCTGCTGGAGCATTGACAGATCCATGTCCAGAATTTCCTTCGGGTAGAACACCTGCAGATCTTGCTTCTAGCAATGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCACCTCGAATCACTCACAATGGATGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAATGAAAGCTGTGCAAACAGTTTCAGAGCGAAGTGCGACACCTGTGCTTTATGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAGGTATTCAGGATGCAGTCATTTCAGAGGAAGCAGTTAGCTCAGTATGAAGATGATGGAGAATTTGGATTGTCAGATCAACAAGCTTTTTCCCTCCTAGCTTCTAAGGCATGCAAATCTGGACAAGGAAAGGGTTTAGCCAATGCTGCTGCAATACAGATACAGAAAAAGTTCCGTGgttggaagaagagaaaagaattcTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAATCGATCATTTGGTCAGTGGGAATCCTGGAAAAGGTCATATTACGCTGGCGGCGCAAGGGCAGTGGTTTACGTGGATTTCGACCCGATGCCCTGAATAAGGTCCCTGACCAACCAAGCGATTCTCAGAAAGAGGATGATTATGATTTTCTCAAGGAAGGGCGGAAACAAAGTGAAGAAAGGTTCCAAAAGGCCCTTTCACGTGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCCCAATACCGGCGGGTGCTAAATGTAGTAGAGGACTTCCGTCAAACCAAGCAGGGaagtaatttgaatttgatgaaTTCGGAAGAGACAGTTGATGATGTAGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCATTCGATTGA 3222 0.4103 MAERASYGLGPRLDIQQLQLEAQHRWLRPAEICEILRNCRLFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGGKAYTDEATSDSQEGSSLSSGFPRNYGRVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLQPYHESRNLGNDRPMGDRGQLSISGKEYIPLVQGDKSRASDATYIEGQREHGIASWDNAMEQSAGKYTDPSLVSSISIPSSALGNVLEEYHTVPGNLLERRNDLTEEERGSQPVQSNWQIPFEDNTGELPKWGFTQSLGLEFGSDYGASLLGDVTNNASPDIVPELFTFNGEPKEQSVDQNFSKQYTHAQSQPAVKSNSDYEVPGEASMNYALTMKRGLLDGEESLKKVDSFSRWITKELAGVDDLHMQSSPGISWSTDDCGDVIDDTSLNLSLSQDQLFSINDFSPKWAFAESEIEVLIVGTFLKSQPEAATCNWSCMFGEVEVPAEVLANGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIDFADFFNSLTEMDLHLQLVGLLSLNSVHTLNQVFEDDMEKRNLIFSLILLKEEEEYSSKDETTVEMDVSKDKLKEHMFYKQVKEKLYSWLLHKVTETGKGPLVLGEEGQGVLHLVAALGYDWAIKPIMTAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGAAAGALTDPCPEFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLTMDENKDGRKETSGMKAVQTVSERSATPVLYGDIPDAICLKDSLNAVRNATQAADRIHQVFRMQSFQRKQLAQYEDDGEFGLSDQQAFSLLASKACKSGQGKGLANAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKSIIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPDQPSDSQKEDDYDFLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKQGSNLNLMNSEETVDDVEDLIDIDMLLDDENFLPIAFD 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1929 1073 Pfam IPT/TIG domain 487 572 IPR002909 -
Ssu5g1929 1073 MobiDBLite consensus disorder prediction 147 187 - -
Ssu5g1929 1073 SMART ANK_2a 720 749 IPR002110 GO:0005515
Ssu5g1929 1073 SMART ANK_2a 687 716 IPR002110 GO:0005515
Ssu5g1929 1073 SMART ANK_2a 759 788 IPR002110 GO:0005515
Ssu5g1929 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 946 IPR027417 -
Ssu5g1929 1073 Gene3D Immunoglobulins 480 575 IPR013783 -
Ssu5g1929 1073 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Ssu5g1929 1073 Gene3D - 651 790 IPR036770 -
Ssu5g1929 1073 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1073 - -
Ssu5g1929 1073 Pfam Ankyrin repeats (3 copies) 692 781 IPR002110 GO:0005515
Ssu5g1929 1073 ProSiteProfiles IQ motif profile. 919 943 IPR000048 GO:0005515
Ssu5g1929 1073 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Ssu5g1929 1073 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1073 - -
Ssu5g1929 1073 ProSiteProfiles IQ motif profile. 896 925 IPR000048 GO:0005515
Ssu5g1929 1073 ProSiteProfiles Ankyrin repeat region circular profile. 720 745 - -
Ssu5g1929 1073 SMART iq_5 918 940 IPR000048 GO:0005515
Ssu5g1929 1073 SMART iq_5 895 917 IPR000048 GO:0005515
Ssu5g1929 1073 SUPERFAMILY Ankyrin repeat 682 781 IPR036770 -
Ssu5g1929 1073 SUPERFAMILY E set domains 487 573 IPR014756 -
Ssu5g1929 1073 Gene3D - 896 943 - -
Ssu5g1929 1073 Pfam IQ calmodulin-binding motif 921 940 IPR000048 GO:0005515
Ssu5g1929 1073 Pfam IQ calmodulin-binding motif 898 916 IPR000048 GO:0005515
Ssu5g1929 1073 SMART CG_1_2 18 136 IPR005559 GO:0003677
Ssu5g1929 1073 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Ssu5g1929 1073 MobiDBLite consensus disorder prediction 201 225 - -
Ssu5g1929 1073 MobiDBLite consensus disorder prediction 967 987 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1929 Ssu-Chr5 56389640 56400199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1929 1 1047 CAMTA Transcription Factor Family AT5G64220 53.782 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Ssu5g1929 CG-1 1.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1929 K21596 - gmx:100795682 1894.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1929 5 56389640 56400199 Ssu1g0192 1 4985859 4991861 PCT