Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1925 ATGGCATTCGAGAATGCAACACTCACTGTTGAAAACAAAGAGGTTATATTCATCAAACCTTCAAAACCCACTCCTACCACCATTCTTTCACTGTCAAGCATTGACAATGCTCCCGAGAATTTCTTAGAGCAAAGCCTTCATGTATACCGATCGGCAAATCACAATTCCCCTAATGCTACCAAACTTGACCCTGCAAATGTGATTAAAGATGGCCTCTCGAAGGCTCTCATTTACTATTATCCTCTTGCAGGAAAGCTAGTAAGGCACGCTGATAGAAAACTCAGAATCAACTGCACCTCCGAAGAAATTCCTTTCATAGAGGCTATTTGCAATTGCGACCTCTCATCTCTTCATTACCTAGATGGCAATGACGTTGAAATGGCAAAACACTTTGGCGTCGATGACTTTCCTTCTCAAAATGAATTTGGAAATCTATATCCTTTCGTTTTCAAGGTGACCAAATTCCTCCGTGGGGGTTTCACGTTTGCAGTGCGCTTTTACCACGTTGTTTATGACGGGACTGGGTTATCTCAGTTCTTACGCGCAGAGCCAATGAACACGATGCCTGTCCCATGCGATATGTATGAACGAGCAAGTATGTTTGATATCCTGCCTCCCAGTAATTTGGATCCTTCAACGAGTGGAGGGGTAAGGGTTTACACAACCCTGCCTAGTGCTACCATGCCCAAGTTCAAGGAAGAGATGAAAGCTCTTAGGACCTTGTTAGATAACGCCTATGGTCTTGCAccttcttaa 756 0.4325 MAFENATLTVENKEVIFIKPSKPTPTTILSLSSIDNAPENFLEQSLHVYRSANHNSPNATKLDPANVIKDGLSKALIYYYPLAGKLVRHADRKLRINCTSEEIPFIEAICNCDLSSLHYLDGNDVEMAKHFGVDDFPSQNEFGNLYPFVFKVTKFLRGGFTFAVRFYHVVYDGTGLSQFLRAEPMNTMPVPCDMYERASMFDILPPSNLDPSTSGGVRVYTTLPSATMPKFKEEMKALRTLLDNAYGLAPS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1925 251 PANTHER ACYL TRANSFERASE 4 5 182 - -
Ssu5g1925 251 PANTHER ACYL TRANSFERASE 4 183 239 - -
Ssu5g1925 251 Pfam Transferase family 9 181 - -
Ssu5g1925 251 Gene3D - 5 198 IPR023213 -
Ssu5g1925 251 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 182 - -
Ssu5g1925 251 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 183 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1925 Ssu-Chr5 56331388 56334662 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1925 8 173 Monolignol Biosynthesis Gene Families AT5G48930 27.326 2.89e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1925 K20240 - gmx:100795051 279.641