LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g1925	ATGGCATTCGAGAATGCAACACTCACTGTTGAAAACAAAGAGGTTATATTCATCAAACCTTCAAAACCCACTCCTACCACCATTCTTTCACTGTCAAGCATTGACAATGCTCCCGAGAATTTCTTAGAGCAAAGCCTTCATGTATACCGATCGGCAAATCACAATTCCCCTAATGCTACCAAACTTGACCCTGCAAATGTGATTAAAGATGGCCTCTCGAAGGCTCTCATTTACTATTATCCTCTTGCAGGAAAGCTAGTAAGGCACGCTGATAGAAAACTCAGAATCAACTGCACCTCCGAAGAAATTCCTTTCATAGAGGCTATTTGCAATTGCGACCTCTCATCTCTTCATTACCTAGATGGCAATGACGTTGAAATGGCAAAACACTTTGGCGTCGATGACTTTCCTTCTCAAAATGAATTTGGAAATCTATATCCTTTCGTTTTCAAGGTGACCAAATTCCTCCGTGGGGGTTTCACGTTTGCAGTGCGCTTTTACCACGTTGTTTATGACGGGACTGGGTTATCTCAGTTCTTACGCGCAGAGCCAATGAACACGATGCCTGTCCCATGCGATATGTATGAACGAGCAAGTATGTTTGATATCCTGCCTCCCAGTAATTTGGATCCTTCAACGAGTGGAGGGGTAAGGGTTTACACAACCCTGCCTAGTGCTACCATGCCCAAGTTCAAGGAAGAGATGAAAGCTCTTAGGACCTTGTTAGATAACGCCTATGGTCTTGCAccttcttaa	756	0.4325	MAFENATLTVENKEVIFIKPSKPTPTTILSLSSIDNAPENFLEQSLHVYRSANHNSPNATKLDPANVIKDGLSKALIYYYPLAGKLVRHADRKLRINCTSEEIPFIEAICNCDLSSLHYLDGNDVEMAKHFGVDDFPSQNEFGNLYPFVFKVTKFLRGGFTFAVRFYHVVYDGTGLSQFLRAEPMNTMPVPCDMYERASMFDILPPSNLDPSTSGGVRVYTTLPSATMPKFKEEMKALRTLLDNAYGLAPS	251

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g1925	251	PANTHER	ACYL TRANSFERASE 4	5	182	-	-
	Ssu5g1925	251	PANTHER	ACYL TRANSFERASE 4	183	239	-	-
	Ssu5g1925	251	Pfam	Transferase family	9	181	-	-
	Ssu5g1925	251	Gene3D	-	5	198	IPR023213	-
	Ssu5g1925	251	PANTHER	HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN	5	182	-	-
	Ssu5g1925	251	PANTHER	HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN	183	239	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g1925	Ssu-Chr5	56331388	56334662	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g1925	8	173	Monolignol Biosynthesis Gene Families	AT5G48930	27.326	2.89e-10	58.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g1925	K20240		-	gmx:100795051	279.641

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