Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1922 ATGGCATACAAGAATACCCTCATTGTTGAAAACAAAGAGGTTATATTCATCAAACCTTTAAAACCCACTCCTACCACCATTCTTTCACTGTCAAGCATCGACAATGATCCGGAGGGCAATTACCACGAGCAAAGCCTTCATGTATACCGATCGGCAAATCACAATTCCCCTTACAGTTCCAAACTTGACCCCGCAGAAGTGATCAAAGAGGCTCTCTCAAAGGCTCTCATTTACTATTATCCTGTTGCAGGAAAGCTAGTAAGACATGCTGATGGAAAACTCAGAATCAACTGCAACTCCGAAGGAGTTCCATTCACTGAGGCTATTTGCAATTGCGACCTCTCATCTCTCCATTACCTAGACGGCAATAACGTTGAAATGGCAAAACACTTTGCGGTTGATTTTCCTTCCGAAGATGAGTTTGGAAACCAATATCCTTTGCTTGTCAAGGTGACTAAATTTCTCTGTGGAGGTTTCACATTTGCAGCGTGCGGGTCACACGCTGTTTGTGATGGGATTGGGTCATCCCAGTTCTTTCGAGCCATGGCTGAACTTGCAAGTGGAAAAACTGAGCCCTCTGTGAAACCTGTGTGGGAAAGAGAGAGACTAGTGGGCACATTCACTAGTCAACCCCTTCAATATCCCATGGAAAATGCCTATGTTGCAGTTTCACCATTTCTGCCAAGCACGGATTTGTCGCATGAATGCTCTAAGGTGGACAGGGAGAGCATAACAAGACTGAAGATGAGTTTGATGAAAGAAAGTGACGATGAAGACTGTACTAAGAACAAAGGGTTCGGAACTTTTGAAGCCCTTGCTGCGTACATCTGGAGGTCAAGAACCATAGCCTTGAAACTGAACTACGATGGGGAAACTATGCTGGTTATCACAGTGGGGGTGAGACCACACTTGCTGGATCCTTTGCCCAGTGGATACTACGGGAATGCCATCGTGGAGGCATATGTTATGTTAAAAGTGAGGGAGCTGAACGAAAGGCCACTCTTGGAGGTTGTGAAACTCATCAGAGAGAGCATAAAGGCTGCTTCTAGCAATGATTATATCAGAAACGCAATTGACACTCTGGAAACGAAACCAAggaaatataattatgattatgacAGTGGTGCAATAACGATTATGACGGATTGGAGATATTTGGAATTGTTGAAGAAGGTTGATTTTGGGTGGAAGGAGCCAGTGAATTCGATTCCTGTTCCATGCGACTTGGATGAATATGAGGGTCTGTGCATGATCCTTCCTCCCAGTAATTTGGATCCTTCAATGAGTGGAGGAGCAAGGGTTTACGTATCCCTACCAAGTGCTGCCATGCCCAAGTTCAGGGAAGAGATGAAAGCTCTTACCAGTATTCGAGAGACAAATTCTATGATTCCctccaaaatttaa 1404 0.4366 MAYKNTLIVENKEVIFIKPLKPTPTTILSLSSIDNDPEGNYHEQSLHVYRSANHNSPYSSKLDPAEVIKEALSKALIYYYPVAGKLVRHADGKLRINCNSEGVPFTEAICNCDLSSLHYLDGNNVEMAKHFAVDFPSEDEFGNQYPLLVKVTKFLCGGFTFAACGSHAVCDGIGSSQFFRAMAELASGKTEPSVKPVWERERLVGTFTSQPLQYPMENAYVAVSPFLPSTDLSHECSKVDRESITRLKMSLMKESDDEDCTKNKGFGTFEALAAYIWRSRTIALKLNYDGETMLVITVGVRPHLLDPLPSGYYGNAIVEAYVMLKVRELNERPLLEVVKLIRESIKAASSNDYIRNAIDTLETKPRKYNYDYDSGAITIMTDWRYLELLKKVDFGWKEPVNSIPVPCDLDEYEGLCMILPPSNLDPSMSGGARVYVSLPSAAMPKFREEMKALTSIRETNSMIPSKI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1922 467 Gene3D - 228 450 IPR023213 -
Ssu5g1922 467 Pfam Transferase family 9 452 - -
Ssu5g1922 467 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 454 - -
Ssu5g1922 467 PANTHER ACYL TRANSFERASE 4 5 454 - -
Ssu5g1922 467 Gene3D - 4 215 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1922 Ssu-Chr5 56280437 56281840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1922 12 448 Monolignol Biosynthesis Gene Families AT5G48930 29.621 1.04e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1922 K20240 - gmx:100783730 678.707