Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1921 ATGGCAAACAAGAATGCAACCCTGAGCgttgaaaacaaagaaattatattCATCAAACCTTCAAAACCCACTCCTACCACCATTCTTTCACTGTCTAGCATTGATAATGTTCCCGAGAACAATTTCTTATCGCAAAGCCTTCATGTATACCAAAATTCCCTTAGTAGTACCAAACTTGATCCTGCAAATGTGATCAAAGAGGCCCTCTCAAAGGCACTGTTTTACTACTATCCTCTTGCAGGAAAGCTAGTAAGACATGCCGATGGAAAACTCAGAATCAACTGCAACTCCGAAGGAGTTCCATTCATAGAGGCTGTTTGCAATTGCGACCTCTCATCTCTTCATTACCTAGATGGCAATGACGTTGAAATGGGAAAACACTTTGGGGTCGATGATTTTCCTTCTCAAGATGAATTTGGAAACCAATATCCTTTGCTTTTGAAGGTGACCAAATTTCTCTGTGGGGGTTTCATATTTGTAGTGGGCTGGTCACACGCTGTTTGTGACGGGACTGGGATATCTCAGTTCTTAAGAGCCGTGGCAGAACTTGCAAGTGCAAGTGGGAAAACTGAGCCCACCGTGAAACCTGTGTGGGAAAGAGAGAGACTAGTGGGCGCAATCACTAGTCAACCCATGGAAAATCCCTTGGACAAGACCTCTTTTTCAGTTTCACCATTTCTGCCAACCGCGGAATTTTCGCATGAATGCTCTAAGATGGACAGTGAGAGCATAACAAGACTCAAGATGAGTTTCATGAAAGAAAGTGACAATGAGCACAAGGGGTTCACAACTTTTGAAACCCTAGCCGCGTGCGTCTGGAGGTCAAGAACCAGAGCCTTGAAATTGAACGACGATGGGGAAACAATACTGATTATCATAGTGGGGGCGAGACCACACTTAATGGATCCTTTGCCCGGTGGATATTACGGGAATGCCATCGTGGTGGCATTTGTTATGTTGACAGTGAGGGAGCTGAACGAAAGACCACTCTCGGAGGTTGTGAAACACATCAGAGAGAGCATAAAGGCTGCTTTTAGCAATGATTATATCAGAAACTCAATTGACACTCTGGAAACAAAAGAAGTAAATTTGAGTTATGAAAGTCATGCAATAACGGTTTTGACAGATTGGAGACATTTGGGTTTGTTGGAAAAGGTTGATTTTGGGTGGAAGGAGCCAGTGAATACGATGCCAGTCCCAAGCGACTTGGATGGAATTACGGGTATGTGCACGATCCTGCCTCCTAGTACTTTGGATCCTTCAATGAGTGGAGGAGCAAGGGTTTACGTATCCCTACCTAGTGCTGCCATGCCCAAGTTCAAGGAAGAGATGAAAGCCCTTACCAGTATCCAAAATGCGTAG 1362 0.4391 MANKNATLSVENKEIIFIKPSKPTPTTILSLSSIDNVPENNFLSQSLHVYQNSLSSTKLDPANVIKEALSKALFYYYPLAGKLVRHADGKLRINCNSEGVPFIEAVCNCDLSSLHYLDGNDVEMGKHFGVDDFPSQDEFGNQYPLLLKVTKFLCGGFIFVVGWSHAVCDGTGISQFLRAVAELASASGKTEPTVKPVWERERLVGAITSQPMENPLDKTSFSVSPFLPTAEFSHECSKMDSESITRLKMSFMKESDNEHKGFTTFETLAACVWRSRTRALKLNDDGETILIIIVGARPHLMDPLPGGYYGNAIVVAFVMLTVRELNERPLSEVVKHIRESIKAAFSNDYIRNSIDTLETKEVNLSYESHAITVLTDWRHLGLLEKVDFGWKEPVNTMPVPSDLDGITGMCTILPPSTLDPSMSGGARVYVSLPSAAMPKFKEEMKALTSIQNA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1921 453 Gene3D - 5 214 IPR023213 -
Ssu5g1921 453 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 448 - -
Ssu5g1921 453 Gene3D - 228 444 IPR023213 -
Ssu5g1921 453 PANTHER ACYL TRANSFERASE 4 5 448 - -
Ssu5g1921 453 Pfam Transferase family 9 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1921 Ssu-Chr5 56265256 56266617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1921 8 442 Monolignol Biosynthesis Gene Families AT5G48930 28.256 2.89e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1921 K20240 - gmx:100783730 678.707