Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1920 ATGGCAAACAAGAATGCAACCCTGAGCgttgaaaacaaagaaattatattCATCAAACCTTCAAAACCCACTCCTACCACCATTCTTTCACTGTCTAGCATTGATAATGTTCCCGAGAACAATTTCTTATCGCAAAGCCTTCATGTATACCAAAATTCCCTTAATAGTACCAAACTTGATCCTGCAAATGTGATCAAAGAGGCCCTCTCAAAGGCACTGTTTTACTACTATCCTCTTGCAGGAAAGCTAGTAAGACATGCCGATGGAAAACTCAGAATCAACTGCAACTCCGAAGGAGTTCCATTCATAGAGGCTGTTTGCAATTGCGACCTCTCATCTCTTCATTACCTAGATGGCAATGACGTTGAAATGGGAAAACACTTTGGGGTCGATGATTTTCCTTCTCAAGATGAATTTGGAAACCAATATCCTTTGCTTTTGAAGGTGACCAAATTTCTCTGTGGGGGTTTCATATTTGTAGTGGGCTGGTCACACGCTGTTTGTGACGGGACTGGGATATCTCAGTTCTTAAGAGCCGTGGCAGAACTTGCAAGTGGGAAAACTGAGCCCACTGTGAAACCTGTGTGGGAAAGAGAGAGACTAGTGGGCACAATCACTAGTCAACCCATGGAAAATCCCTTGGACAAGGCCTCTTTTGCAGTTTCACCATTTCTGCCAACCTCGGAATTTTCGCATGAATGCTCTAAGATGGACAGTGAGAGCATAACAAGACTCAAGATGAGTTTCATGAAAGAAAGTGACGATGAGCACAAGGGGTTCACAACTTTTGAAACCCTTGCCGCGTGCATCTGGAGGTCAAGAAACAGAGCCTTGAAACTGAACGACGATGGGGAAACAATGCTGGTTATCATAGTGGGGGCGAGACCACACTTAATGGATCATTTGCCCGGTGGATATTACGGGAATGCCATCGTGGTGGCATTTGTTATGTTGACAGTGAGGGAGCTGAACGAAAGACCACTCTCGGAGGTTGTGAAACTCATCAGAGAGAGCATAAAGGCTGCTTTTAGCAATGATTATATCAGAAACTCAATTGACACTCTGGAAACAAAAGCagtaaatttgaattatgaaagtCATGCAATAACGGTTTTGACAGATTGGAGACATTTGGGTTTGTTGGAAAATGTTGATTTTGGGTGGAAGGAGCCAGTGAATACGATATTAGTCCCAAGCGATTTGGGTGGAATTACGGGTCTGTGCGCGATCCTGCCTCCCAGTAATTTGGATCCTTCAGTGAGTGGAGGAGCAAGGGTTTACGTATCCCTACCTAGAGCTGCCATGCCCAAGTTCAAGGAAGAGATGAAAGCTCTTACCACTATCCAAAATGTGTAG 1356 0.4329 MANKNATLSVENKEIIFIKPSKPTPTTILSLSSIDNVPENNFLSQSLHVYQNSLNSTKLDPANVIKEALSKALFYYYPLAGKLVRHADGKLRINCNSEGVPFIEAVCNCDLSSLHYLDGNDVEMGKHFGVDDFPSQDEFGNQYPLLLKVTKFLCGGFIFVVGWSHAVCDGTGISQFLRAVAELASGKTEPTVKPVWERERLVGTITSQPMENPLDKASFAVSPFLPTSEFSHECSKMDSESITRLKMSFMKESDDEHKGFTTFETLAACIWRSRNRALKLNDDGETMLVIIVGARPHLMDHLPGGYYGNAIVVAFVMLTVRELNERPLSEVVKLIRESIKAAFSNDYIRNSIDTLETKAVNLNYESHAITVLTDWRHLGLLENVDFGWKEPVNTILVPSDLGGITGLCAILPPSNLDPSVSGGARVYVSLPRAAMPKFKEEMKALTTIQNV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1920 451 Gene3D - 226 442 IPR023213 -
Ssu5g1920 451 Gene3D - 5 213 IPR023213 -
Ssu5g1920 451 PANTHER ACYL TRANSFERASE 4 5 446 - -
Ssu5g1920 451 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 446 - -
Ssu5g1920 451 Pfam Transferase family 9 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1920 Ssu-Chr5 56241446 56242801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1920 8 440 Monolignol Biosynthesis Gene Families AT5G48930 28.381 3.21e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1920 K20240 - gmx:100783730 677.167