Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1916 atgaattttatttgttttgtttttatctttgtttttttcccTCTGATTTATCTTCTTCTCCTTGCACTTGCACATGGTGTGACCGCTGTACTTTCTCAGTGTTCAAGACATTTCATTAAAATCGGTTCTTGGCCTCTTGTTTCTGTTATTGATTCTTATCTACAAATAGATCCTGCTACTGCTGCTGCAAGTCAGAACAATAGAGAGGAAGTAGATTCTCGATCAGTCTTTGTGGGCAATGTGGACTATTCATGTACTCCCGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACCGTAAACCGAGTCACCATCCGCACTGATAAGTTTGGCCAACCAAAGGGTTATGCTTACGTAGAGTTTCTTGAAGTAGAGGCTGTTCAAGAGGCTCTTTCGCTGAATGAATCTGAACTACATGGACGTCAATTGAAGGTAACTGCTAAGAGGACCAACATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTATGCAGGGTTTCGAGGCAGAGCCCCATATGCACCTCCTTTTGCCTATGCTCCTTTTGGATATGGAAAGGTTCCAAGGTTCAGAATGACGATGCGCTACAGCCCCTACTATTGA 609 0.4204 MNFICFVFIFVFFPLIYLLLLALAHGVTAVLSQCSRHFIKIGSWPLVSVIDSYLQIDPATAAASQNNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYAGFRGRAPYAPPFAYAPFGYGKVPRFRMTMRYSPYY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1916 202 CDD RRM_II_PABPs 75 146 - -
Ssu5g1916 202 PANTHER - 57 198 - -
Ssu5g1916 202 Gene3D - 68 154 IPR012677 -
Ssu5g1916 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 57 198 - -
Ssu5g1916 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 144 IPR000504 GO:0003723
Ssu5g1916 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 150 IPR000504 GO:0003723
Ssu5g1916 202 SMART rrm1_1 75 146 IPR000504 GO:0003723
Ssu5g1916 202 SUPERFAMILY RNA-binding domain, RBD 62 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1916 Ssu-Chr5 56154312 56157736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1916 75 143 Eukaryotic Initiation Factors Gene Family AT2G23350 31.429 3.14e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1916 K14396 - gmx:100791351 258.455