Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1915 ATGGCTTCCCTTCTTCCATCTAAGTCACCTGCTCCTCGTGATTATGAAATTAAACCAACCTCAAGACCAATACTCCAGCAAACTGTTGAGGCCACTACACCGGAGATAGAAGCATGTAGTGCTCCAAAAGGGTCCAAAGGAGGAGAAACTTCAGGTTGGAATGATGAGAGAGAAGAGATGGGTATCTGTTTGACTTGGAAGGATGTATGGGTGACTGCTTCTGTGGAAAAGAATGGAAGCAAATCAATTCTTCAGGGCCTGACTGGTTATGCCAAGCCAGGGCAGCTCTTGGCCATAATGGGTCCTTCTGGTTGTGGAAAGTCTACACTTCTTGATGCCTTAGCAGGGAGATTAAGTTCCAACACAAGGCAAACAGGGGAGATTCTGATCAACGGGAAGAAACAAGCACTGGCATATGGAGCCTCAGCATATGTCACCCAAGATGATACCTTACTGACAACCTTAACGGTTGGAGAAGCAGTGCACTATTCAGCTCAACTCCAATTGCCTGACACCATGtccaagaaagagaagaaagagagagcaGAGTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGGTGGGGTGTTAAAGGAATTAGTGGGGGTCAGAAGAGGCGAGTGAGCATCTGTATTGAGATTCTAACACGACCAGGACTTCTCTTCCTTGATGAACCAACTAGTGGACTCGATAGTGCAGCTTCCTATTATGTCATGAAAACAATCGCTACCCTTGATAAAAGAGATGACATTCACAGGACTGTTATTGCCTCAATCCATCAGCCTAGTAGTGaagtttttcaactttttcacAACCTTTGTCTTCTGTCTTCAGGTAGAACTGTTTATTTTGGACCCGCTTCTGCTGCAAGTGAGTTTTTCGCTTCAAATGGTTTTCCTTGTCCTCCTCTCATGAATCCATCTGATCATTTACTGAAAACCATAAACAAGGATTTCGATCAGgACATTGAGTTGAATTTAGGAGGGACTGAAAGAATACCCACCGAAGAAGCAATTCGTATCCTTGTAAATTCATATAAGTCATCTGAAATGAACCAAGAAGTTCAGAAAGAAGTGGCAGTACTATCTGAAAAGGACCCCAGTTCAacaaacaagaagagaaggcaTGCTGGCTTCCTTAACCAGTGCTTTGCTCTTACTAAAAGATCGTCCATTAACATGCATCGTGATCTAGGCTATTACTGGTTACGCCTTGTCATATATGTTGCGTTGGCTATAAGTTTAGCCACTATTTTCTACGATCTGGGTACAAGTTATCGCTCAATTCAGgATAGAGGTTCGTTTCTTGTGTTTGTGTCTTCATTCATAACTTTCATGACCATAGGCGGATTCCCTTCCTTTGTGGAGGATATGAAGGTGTTTGAACGTGAAAGACTTAATGGGCATTATGGTGTCACTGCATTTGTCATTGGTAACACCTTTTCAGCTATCCCATACTTGCTGTTGGTTTCACTCATTCCTGGTGCTATAGCCTATTACCTTCCTGGTCTTCAGAAAGACTTCGAGCACTTTGTATACTTCATTTGTGTTCTCTTTGCTTGTCTGATGTTAGTAGAGAGCCTTATGATGATAGTTGCGAGCATTGTCCCCAACTTTCTAATGGGTATCATAACCGGTGCTGGAATTCAAGGAATGATGATTTTAAGTGGTGGGTTCTTTAGGTTGCCAAATGATCTTCCTAGGCCATTTTGGAGATACCCAATGTTCTATGTTGCCTTCCATAGATATGCCTACCAAGGATTGTTCAAAAATGAGTTTGTAGGACTAAGATTTCCTACAAATAATGTTGATGGTGGCACGTACATTACTGGTGAAGAGATTATACGAGGTACATGGCAAGTAAACATGAGTTACTCAAAGTGGGTTGATCTTGGAATCTTATTGGGGATGATTATTCTGTATCGAGTTCTCTTTTTGGTTAACATCAAAATTACTGAGAAGCTAAAGCCCATCGTTGTATCGTTCATGTCATCATCAGGGTCTCCCAAGCGAACAATACGGATCATGCAGAATCCCAAAGCCACTCCTTTACAAGAAGTTCAAGTTATGAACAGTTAA 2100 0.4071 MASLLPSKSPAPRDYEIKPTSRPILQQTVEATTPEIEACSAPKGSKGGETSGWNDEREEMGICLTWKDVWVTASVEKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLSSNTRQTGEILINGKKQALAYGASAYVTQDDTLLTTLTVGEAVHYSAQLQLPDTMSKKEKKERAEFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPGLLFLDEPTSGLDSAASYYVMKTIATLDKRDDIHRTVIASIHQPSSEVFQLFHNLCLLSSGRTVYFGPASAASEFFASNGFPCPPLMNPSDHLLKTINKDFDQDIELNLGGTERIPTEEAIRILVNSYKSSEMNQEVQKEVAVLSEKDPSSTNKKRRHAGFLNQCFALTKRSSINMHRDLGYYWLRLVIYVALAISLATIFYDLGTSYRSIQDRGSFLVFVSSFITFMTIGGFPSFVEDMKVFERERLNGHYGVTAFVIGNTFSAIPYLLLVSLIPGAIAYYLPGLQKDFEHFVYFICVLFACLMLVESLMMIVASIVPNFLMGIITGAGIQGMMILSGGFFRLPNDLPRPFWRYPMFYVAFHRYAYQGLFKNEFVGLRFPTNNVDGGTYITGEEIIRGTWQVNMSYSKWVDLGILLGMIILYRVLFLVNIKITEKLKPIVVSFMSSSGSPKRTIRIMQNPKATPLQEVQVMNS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1915 699 Pfam ABC-2 type transporter 267 387 IPR043926 GO:0140359
Ssu5g1915 699 ProSitePatterns ABC transporters family signature. 207 221 IPR017871 GO:0005524
Ssu5g1915 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 310 IPR003439 GO:0005524
Ssu5g1915 699 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 26 691 - -
Ssu5g1915 699 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 26 691 - -
Ssu5g1915 699 MobiDBLite consensus disorder prediction 1 31 - -
Ssu5g1915 699 SMART AAA_5 93 282 IPR003593 -
Ssu5g1915 699 Pfam ABC-2 type transporter 389 600 IPR013525 GO:0016020|GO:0140359
Ssu5g1915 699 Gene3D - 64 302 IPR027417 -
Ssu5g1915 699 Pfam ABC transporter 85 235 IPR003439 GO:0005524
Ssu5g1915 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1915 Ssu-Chr5 56103237 56107074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1915 83 295 Calmodulin-binding Proteins AT2G36910 28.311 4.57e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1915 K05681 - gmx:100813462 1202.19