Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1901 ATGGTGCTGCATCACAGAAAGTTGTTCCCACCATCACCACCAGACTGTGGTGTAATAATACTCTGTTCTCCTGATAATTCAAATAACTCTTCTGATTACCCTCCAACCGCTCCAGATTATGAAGGGAGCCAAAGTTCCGGCAAACACAGCAGGATCTCCACCTACTTGATCATCAGTTTTTCTATTGTAGCCACGGCTCTCTTTGTCCTTTGCTGCTGCGCCATCTACGCCAAGTTTTTCTCCGCTCGGAACAGGTCAAGGAGGAGAACCCCATCTCGGCCACAGACAGAAGAAGATTTCTTAGACGAAGAACGTGGCCCCGTGGTTGAGCACCCCATTTGGTACATCCGCACCACCGGTCTCCAGCAGTCGGTCATCGGCGCCATCACGGTTTGCAAGTACAAAAAAGGTGAGGGGCTGATCGAAGGCACGGAATGTTCCGTTTGCCTGAGCGAGTTTCAAGAGGACGAGAATCTCAGGCTCTTGCCAAAGTGCAACCACGCTTTTCACTTACCTTGTATTGACACGTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGCGCTCCTATTGTCACCGACCCCGCGAGGGTTCCCTCCGTGGACCCTCATGCGTTTGGTTCACGTTCTTTTGTGGAGATGGAGGTTTTGGGGGGCGGAGCGGAAAATACTCAAAACAGTGCTGATTTGTTGAGGAGTGAGGCAGAGGAAGGAGAGCAAGAAGTTGAAGTGAGTAGTGAAACTGAGAACTCGGGTTCAGAGGTGGTAAACGTGCAGCCAAGGAGGTCGGTGTCTCTGGATTCTTCTTCTGCTAACAAGATCAGTCTTGCTCTTGCAACTGTTGTGTCAGGGGAATCTCACGGGAATAATTCAAAGAGGGTTGCAAAAGGTgggtcttcttcttcttcttcttcttcttccaggACAAGGTGTCTGCAGAGCGAGCCTAGTTCTATGAAGAGGTCACGATCCTTCAATGCGAAACACCTCTTGTCATGGAATGGCCGCAGTCAGAGAAAGCCAAATCCAAATGCTCCTCTGAGAAGCTTCTGA 1053 0.4881 MVLHHRKLFPPSPPDCGVIILCSPDNSNNSSDYPPTAPDYEGSQSSGKHSRISTYLIISFSIVATALFVLCCCAIYAKFFSARNRSRRRTPSRPQTEEDFLDEERGPVVEHPIWYIRTTGLQQSVIGAITVCKYKKGEGLIEGTECSVCLSEFQEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPARVPSVDPHAFGSRSFVEMEVLGGGAENTQNSADLLRSEAEEGEQEVEVSSETENSGSEVVNVQPRRSVSLDSSSANKISLALATVVSGESHGNNSKRVAKGGSSSSSSSSSRTRCLQSEPSSMKRSRSFNAKHLLSWNGRSQRKPNPNAPLRSF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1901 350 CDD RING-H2_EL5_like 145 188 - -
Ssu5g1901 350 SUPERFAMILY RING/U-box 140 195 - -
Ssu5g1901 350 MobiDBLite consensus disorder prediction 231 269 - -
Ssu5g1901 350 MobiDBLite consensus disorder prediction 283 350 - -
Ssu5g1901 350 Pfam Ring finger domain 145 188 IPR001841 -
Ssu5g1901 350 SMART ring_2 146 187 IPR001841 -
Ssu5g1901 350 MobiDBLite consensus disorder prediction 245 269 - -
Ssu5g1901 350 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 336 IPR044675 -
Ssu5g1901 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 195 IPR013083 -
Ssu5g1901 350 PANTHER RING-H2 FINGER PROTEIN ATL54 31 336 - -
Ssu5g1901 350 Coils Coil 221 241 - -
Ssu5g1901 350 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1901 Ssu-Chr5 55846917 55847969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1901 60 262 C3H Transcription Factor Family AT1G72220 45.238 1.77e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1901 - - gmx:100801551 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1901 5 55846917 55847969 Ssu5g1901 5 55846917 55847969 ECH