Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1891 ATGGATGGCGGCGGTGGCGGAAACCGAGCAGAGGCGGAGCGGTGGCTGTACACGGCGAACAAGCTGCTGAGCGCGCGCGACCTGCACGGGGCGCGTTCGTTCGCGATCCGCGCGCGCGAGTCGGACCCGACGTACGAGGCCTCGGAGCACCTCCTGACGGTGATCGACACGCTCCTGGCGGGCGAGTCGCGGATCAACGACCACCACCGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACCAACATCGACCACATCGCCGCCCAGTACCGCCGCCTCGCCCTCCTCCTCGACCCCCACCGCAACCTCTTCGCCTTCGCCAGCCACGCCTTCTCGCTCGTCCACGACGCCTGGTCCGTCCTCTCCAACCCCGCCAAGAAGGCCATGTACGACAGCGAGCTCCGCCTCCTCACCACCCCGCCGCCGCCTCAGCCGCCGCCGCACCCTCCTCCTCCTCAGCCTCACCCTCATCCCGCCCCGAGGCGAAACCCTAGATCGCGGGACGATTCGGATCGTCCCGAGTCCGCCGAGTCGACTAGGCAGACTCGCACCGTCGAAACCGACGGGGGAACCAGTTTCTGGACCTCGTGCCCTTACTGTTACGTCCTGTACGAATACCCGAAAGTGTACGAGGAGTGCACCTTGCGGTGCCAGAGTTGCCGGAGGGGGTTTCATGCGGTGGTGATACGGTCGCCGCCGCCGCTGACGGGGAAAGACGGTTCCTACTGTAGTTGGGGGTTTTTTCCGTTAGGGTTTTCTGGGGATTCGAAAGATGTGAACGGGTTTGCTTCGAATTGGAACCCGTTTTCCCCTTTGTTCCCTTGCCCCTTGAAGGGGTCGTCCAATAGGAAGACTCAGAGGAATTGGGCTTACTACGACGACGAGGCCGCGGCGGCGTTCATTGAGTTTTCGGACCCGAGTGACGACGATTCCGGTGATGGAGACTGGAGGGGTGGGAAGAGGAGTGGGAGGAAGAGGACTAGGGTTCACAGGAGGAAAAGTTCTGGGGATGTGAGGAGGGAACCCGTGGAGAGGCCTAGGAGGGGTGTTAATGCAGGGCATGATGAGAATGAGGGTTCTGGTGATGCTGCTGGTGCTGTTAATGCTAATGCTAGTGCTGGTACTAATGCTGCCTCCTCTGCTGCGCCGTCTGGTGCGAGGGCGGAGTCTAGTAAGAAGGCTGCGCTGGGTGGTTCCAGGAGGAGGGGTGCCGCGAACTTGGGGAAGTTGGATTTGAATGTGGAGTTCAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGCGCGCGATCGCGAAGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGCCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGCAGATGATAAGGTTAAGGGTCATTAG 1425 0.6056 MDGGGGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPTYEASEHLLTVIDTLLAGESRINDHHRDWYGILQILRYTTNIDHIAAQYRRLALLLDPHRNLFAFASHAFSLVHDAWSVLSNPAKKAMYDSELRLLTTPPPPQPPPHPPPPQPHPHPAPRRNPRSRDDSDRPESAESTRQTRTVETDGGTSFWTSCPYCYVLYEYPKVYEECTLRCQSCRRGFHAVVIRSPPPLTGKDGSYCSWGFFPLGFSGDSKDVNGFASNWNPFSPLFPCPLKGSSNRKTQRNWAYYDDEAAAAFIEFSDPSDDDSGDGDWRGGKRSGRKRTRVHRRKSSGDVRREPVERPRRGVNAGHDENEGSGDAAGAVNANASAGTNAASSAAPSGARAESSKKAALGGSRRRGAANLGKLDLNVEFSNEVEEPSRGARDREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1891 474 MobiDBLite consensus disorder prediction 163 183 - -
Ssu5g1891 474 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 474 - -
Ssu5g1891 474 SMART dnaj_3 70 128 IPR001623 -
Ssu5g1891 474 Pfam DnaJ domain 71 133 IPR001623 -
Ssu5g1891 474 MobiDBLite consensus disorder prediction 140 161 - -
Ssu5g1891 474 Gene3D DnaJ domain 60 141 IPR036869 -
Ssu5g1891 474 MobiDBLite consensus disorder prediction 305 404 - -
Ssu5g1891 474 MobiDBLite consensus disorder prediction 138 190 - -
Ssu5g1891 474 MobiDBLite consensus disorder prediction 371 388 - -
Ssu5g1891 474 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 5 474 - -
Ssu5g1891 474 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
Ssu5g1891 474 CDD DnaJ 71 125 IPR001623 -
Ssu5g1891 474 SUPERFAMILY Chaperone J-domain 67 137 IPR036869 -
Ssu5g1891 474 MobiDBLite consensus disorder prediction 336 357 - -
Ssu5g1891 474 MobiDBLite consensus disorder prediction 417 439 - -
Ssu5g1891 474 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1891 Ssu-Chr5 55701397 55702821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1891 11 473 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 43.396 1.50e-109 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1891 - - gmx:100811866 679.863