LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g1890	ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCCAGACAGGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGTTGTCAACCCTTTGTGATGCGGACATAGCTCTCATGGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCTACAAGTAATTGAAAGGCGCGATCGCCATTCAGCAATGCATAGATCGGACCGCCCCTCTATTGAGCTGCAGATTGAGAATGACTCCAACGACATCCTGCGCAAAAGAGTAGAAGATAAGAATCGTGAACTAAGACAGGTGAATGGTGAAGATCTGCAAGGATTGACATTACAAGAACTGCAGAAACTAGAGGAACTGCTTAAAAGAGGTTTGACCAATGTTTCAAAAGTAAAGgATGAAAAAGTTATGCAAGAGATCAACACCCTTAAGAGAAagGGAGTAGAACTAATGGAGGAAAACCAAAGATTGAAACAGGTACCGAGCGTTATCCATGTACATAGGCAATCATCGGAATCCATTATTACAAGTTCATCTAATCTTCGTGAAGATGGTGGTAGTGACACATCTCTCAAGTTGGGGTTACCTTGA	615	0.4163	MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASSSMLQVIERRDRHSAMHRSDRPSIELQIENDSNDILRKRVEDKNRELRQVNGEDLQGLTLQELQKLEELLKRGLTNVSKVKDEKVMQEINTLKRKGVELMEENQRLKQVPSVIHVHRQSSESIITSSSNLREDGGSDTSLKLGLP	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g1890	204	CDD	MADS_MEF2_like	3	78	IPR033896	GO:0000977\|GO:0045944
	Ssu5g1890	204	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Ssu5g1890	204	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	188	-	-
	Ssu5g1890	204	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Ssu5g1890	204	Gene3D	-	14	92	IPR036879	GO:0003677\|GO:0046983
	Ssu5g1890	204	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Ssu5g1890	204	ProSiteProfiles	K-box domain profile.	85	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu5g1890	204	Coils	Coil	122	142	-	-
	Ssu5g1890	204	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Ssu5g1890	204	Pfam	K-box region	93	167	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu5g1890	204	Coils	Coil	148	168	-	-
	Ssu5g1890	204	PANTHER	-	1	188	-	-
	Ssu5g1890	204	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Ssu5g1890	204	Coils	Coil	85	112	-	-
	Ssu5g1890	204	MobiDBLite	consensus disorder prediction	182	204	-	-
	Ssu5g1890	204	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Ssu5g1890	204	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Ssu5g1890	204	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g1890	Ssu-Chr5	55637135	55661231	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g1890	1	204	MADS-box Gene Family	AT2G22540	46.835	3.07e-65	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ssu5g1890		K-box	2e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g1890	-		-	gmx:100815814	329.717

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g1890	5	55637135	55661231	Ssu1g0233	1	5585690	5599084	PCT