Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1877 ATGGATAGGGTGAACAATCGGAGCGAGGACGGGGAAGAGCCACCGGTGGCGGCGGTTCCCATGCAGGTGGATGGGTTCCATTACGCCAATGGTTCCGATGAAGGGGAAGAAGCTGCTCCACTCGCCAATGCTTCTTCTGCTATGCACTTCCGAACCAGCGAACTCACCATTTCCTTCGAAGGCGAGGTCTATGTTTTCCCAGCCGTTACGCCAGAAAAGGTGCAGGCTGTATTATTACTTTTGGGAGGGCAGGAGATGCCAAATAGTGCCCCCACCTCTGACTTTTTGTTGCAGCAAAACTGTCAGGACATTAGGGGAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCACGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTACTCTTGCCGCAAAGAGGTTGCCCAAAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTACCAATCCCCTGCTGAAAACTGGGATTCAAGCAATGGTACTCCTTGCCCAGAATCTATGGAACGTAGATGCCAGCATTGTGGAATTGGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAactgGATACTCCAGCTGATATAAAGCCTtcaacagcagaagcagagCATTCTTGTGCTAACCAGGACAAGGAGgGAAGCCCTGTGGAAACTAAGCCTGTGCAAATGGATTCCCGACATTCATCTGAGAAGACAAATGAGCAgTTTATTATCGGAACTGTTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCAGGCTCTTAGGCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGACCAGGTTGATATTGATGATCCCAACCTGAGGACTTACTGGCTGTGA 1053 0.4644 MDRVNNRSEDGEEPPVAAVPMQVDGFHYANGSDEGEEAAPLANASSAMHFRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGQEMPNSAPTSDFLLQQNCQDIRGINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYQSPAENWDSSNGTPCPESMERRCQHCGIGEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTPADIKPSTAEAEHSCANQDKEGSPVETKPVQMDSRHSSEKTNEQFIIGTVESVTDNLSIQVENQALRLHEQDTLEDLADASGTEFEIPAGFDDQVDIDDPNLRTYWL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1877 350 ProSiteProfiles Tify domain profile. 48 83 IPR010399 -
Ssu5g1877 350 CDD ZnF_GATA 187 230 IPR000679 GO:0006355|GO:0043565
Ssu5g1877 350 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g1877 350 PANTHER GATA TRANSCRIPTION FACTOR 28 9 341 IPR045280 GO:0006355
Ssu5g1877 350 MobiDBLite consensus disorder prediction 241 284 - -
Ssu5g1877 350 Pfam GATA zinc finger 188 224 IPR000679 GO:0006355|GO:0043565
Ssu5g1877 350 ProSiteProfiles CCT domain profile. 119 161 IPR010402 GO:0005515
Ssu5g1877 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 235 - -
Ssu5g1877 350 SMART tify_2 48 83 IPR010399 -
Ssu5g1877 350 ProSitePatterns GATA-type zinc finger domain. 188 215 IPR000679 GO:0006355|GO:0043565
Ssu5g1877 350 Pfam tify domain 52 82 IPR010399 -
Ssu5g1877 350 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 9 341 - -
Ssu5g1877 350 Gene3D - 181 240 IPR013088 GO:0006355|GO:0008270
Ssu5g1877 350 SMART GATA_3 182 235 IPR000679 GO:0006355|GO:0043565
Ssu5g1877 350 Pfam CCT motif 119 160 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1877 Ssu-Chr5 55495624 55501295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1877 54 231 Tify Gene Family AT1G51600 59.677 4.96e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu5g1877 CCT 6.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1877 - - gmx:102669848 607.06