Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1866 ATGGCTCTTTTCTGGTTTCTTAAACTGGCCCTCAAATGCCTCGATCATTTCGCATGgcCTCTTCTTGCTTTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATCGAGACTGATTCCCATAAAGAAACTAGGGATTTGATCTCGTACTGGATACTTCTCTCATTAATATACCTCTTTGAGTATGCATTTTCGAGGCTCCTTCAATGGTTCCAGCTCTGGCCATACATTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCTATTGCCTATAATAACCTTATTCGCACTTGCATCTCCTTAAATCCACAAGCAGTCATTTGTAGGTTAAATAACTGGAAGaagttttttttcaagaaagatAACTTTTTACTGCATGCAGAGAGATATGTAAAAGAGAATGGGACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAACTTATGAACCTAATGCAGAAGCAACAAATGCAATTAGAGCTCCTGATAATAAAGAAATGCAACAGAACACAACTTATAAACCTGATGCAGAAGCAACAAATTCATTTAGAGCTACTGATAATGAAGAAATGCAACAGACAAATGAGAAAAAGCTCCAAACAGAGGACAAAGCCATCAAAGATTTGGAGGTGattgagaagaaagaaattccTGCAGGCAAGCAAGATATTCCTGTGGTCCCTATGGACCTTGCACCAAGTCAGAATGCTTCACCAGTCATAGTGGAAACTAAAGGAATAGTGGGGAAAGACACAGCTGGTGGAGAGCTTCCTCAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACTTGCGCTTTATGTCATGTAACGACTACGAGCGAGAAAACCTTGAATATCCACCTACATGGGAGGAAACACAGAGCTACTTGTGAAGCTCTGAAAGCAAAGAATCAACCTGTTCCACAGAAGGTGAAAAGTGATCAGTCCAAAGAGGAACTGAAACAGAAGAAACCATATGAACCTGCTTTTACGAAACATTCCAAAATTAGATGTGAAGTCTGTAATGTCTATTGCCCTAACGAGATTGCCTTGGCCTCTCACAAATATGGGAAGAAGCATTTggccaaaattaaaaatttaatctga 1128 0.3856 MALFWFLKLALKCLDHFAWPLLALGYPLCASVQAIETDSHKETRDLISYWILLSLIYLFEYAFSRLLQWFQLWPYIKLMIIFWLIIPDFGRASIAYNNLIRTCISLNPQAVICRLNNWKKFFFKKDNFLLHAERYVKENGTEALEKLIASKNTTYEPNAEATNAIRAPDNKEMQQNTTYKPDAEATNSFRATDNEEMQQTNEKKLQTEDKAIKDLEVIEKKEIPAGKQDIPVVPMDLAPSQNASPVIVETKGIVGKDTAGGELPQSSTHKEVQKEWTCALCHVTTTSEKTLNIHLHGRKHRATCEALKAKNQPVPQKVKSDQSKEELKQKKPYEPAFTKHSKIRCEVCNVYCPNEIALASHKYGKKHLAKIKNLI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1866 375 PANTHER HVA22-LIKE PROTEINS 1 328 IPR004345 -
Ssu5g1866 375 SMART c2h2final6 343 367 IPR013087 -
Ssu5g1866 375 SMART c2h2final6 276 300 IPR013087 -
Ssu5g1866 375 Gene3D Classic Zinc Finger 261 306 - -
Ssu5g1866 375 Gene3D Classic Zinc Finger 314 373 - -
Ssu5g1866 375 MobiDBLite consensus disorder prediction 310 333 - -
Ssu5g1866 375 SUPERFAMILY beta-beta-alpha zinc fingers 339 374 IPR036236 -
Ssu5g1866 375 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Ssu5g1866 375 Pfam Zinc-finger of C2H2 type 344 367 - -
Ssu5g1866 375 Pfam Zinc-finger of C2H2 type 276 300 - -
Ssu5g1866 375 MobiDBLite consensus disorder prediction 319 333 - -
Ssu5g1866 375 SUPERFAMILY beta-beta-alpha zinc fingers 266 312 IPR036236 -
Ssu5g1866 375 SMART ZnF_U1_5 273 307 IPR003604 GO:0003676|GO:0008270
Ssu5g1866 375 SMART ZnF_U1_5 340 374 IPR003604 GO:0003676|GO:0008270
Ssu5g1866 375 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1866 Ssu-Chr5 55287809 55291753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1866 276 372 C2H2 Transcription Factor Family AT2G19380 29.000 7.91e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1866 - - gmx:100812073 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1866 5 55287809 55291753 Ssu5g1866 5 55287809 55291753 ECH