Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1865 ATGTTGCAGATTTCGATTCAACGAGTGAGGAAGTTGAACTTTCTGAGGCCTCAGATCTCTGCTTTGGGAAGGTCCCATTTGTCAACTGCTGCTGCTGAACCATCTTCCAGTAAGCGCAATCCCCCGAGAGTTCCAAATCTTATTGGGGGCAGTTTTGTTGACTCAAAATCGTCAACTTTCATCGATGTTATAAACCCAGCAACCCAAGAAGTTGTGTCGCAAGTTCCTTTGTCTACGGATGAAGAGTTTAAGGCAGCTGTATCTGCAGCAAGGAAGGCATTTCCACCATGGCGTAACACTCCAATTACAACACGCCAACGTGTTATGTTGAAGCTCCAAGAGCTTATACACAGAGATATGGATAAGCTTGCTCTGAAGGTGACCACTGAACAAGGAAAGACATTGAAGGATGCCCAAGGAGATGTATTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAGTATGTTTCCAATGTATCACATGGAATTGATACTTACAGCGTTAGAGAACCACTTGGTGTTTGCGCTGGTATTTGTCCTTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTGTGGCTGTTACTTGTGGTAATACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTGGCATTGGAGGCTGGTTTGCCAGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGCGATGATGACGACATCAAAGCCATATCTTTTGTTGGGTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAACATGGGAGCTAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTAAATGCTTTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTCGAGGCTCACAACCATGGGAAGCTAAACTTGTAGAACGTGCCAAAGCTCTCCAAGTAAATGCTGGAACTGAACCTGATACAGACCTTGGTCCGGTGATCAGCAAGCAGGCAAAGGATCGAATACACAGATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAGACTACTGCTGGATGGAAGAAATATAGTGGTCCCGGGATATGAATCTGGCAATTTTGTTGGCCCAACCATCTTATCAGATATCACTGCCAACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGAGAGCTTGGAAGAGGCCATAAGCATTATCAACAATAACAAGTACGGAAATGGTGCTTCCATATTTACTACATCTGGTGTTGCTGCAAGGAAATTTCAGACTGAGATCGAGGCTGGGCAGGTTGGTATCAATGTTCCCATTCCAGTTCCTTTGCCCTTCTTTTCGTTTACCGGCAACAAGGCATCATTTGCTGGTGATCTCAACTTCTATGGCAAGGCAGGGGTTAACTTCTATACCCAGATCAAGACAGTAACACAGCAATGGAAGGATTCAACTGGCAGTAGCAAGGTTAACTTGGCAATGCCAACCTCTCAAAAATAA 1617 0.4428 MLQISIQRVRKLNFLRPQISALGRSHLSTAAAEPSSSKRNPPRVPNLIGGSFVDSKSSTFIDVINPATQEVVSQVPLSTDEEFKAAVSAARKAFPPWRNTPITTRQRVMLKLQELIHRDMDKLALKVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSVREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVRGSQPWEAKLVERAKALQVNAGTEPDTDLGPVISKQAKDRIHRLVQSGVESGARLLLDGRNIVVPGYESGNFVGPTILSDITANMECYKEEIFGPVLLFMEAESLEEAISIINNNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQQWKDSTGSSKVNLAMPTSQK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1865 538 MobiDBLite consensus disorder prediction 26 42 - -
Ssu5g1865 538 CDD ALDH_F6_MMSDH 44 520 IPR010061 GO:0004491
Ssu5g1865 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 314 325 IPR016160 GO:0016491
Ssu5g1865 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 48 497 IPR016162 GO:0016491
Ssu5g1865 538 SUPERFAMILY ALDH-like 41 521 IPR016161 GO:0016491
Ssu5g1865 538 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 25 538 - -
Ssu5g1865 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 25 538 IPR010061 GO:0004491
Ssu5g1865 538 MobiDBLite consensus disorder prediction 26 45 - -
Ssu5g1865 538 Pfam Aldehyde dehydrogenase family 52 516 IPR015590 GO:0016491
Ssu5g1865 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 289 489 IPR016163 GO:0016620
Ssu5g1865 538 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 46 520 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1865 Ssu-Chr5 55277804 55284144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1865 1 504 Aldehyde Dehydrogenase Gene Family AT2G14170 79.762 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1865 K00140 - gmx:100791508 995.727