Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1863 ATGCTGAGGAATAGAGGTATGGAGGAGGAGGATGTCTCACTTTTTGATCATGCTATGGACAATGATTTCGAAAGAATGTCTCTACCCAAGAAGTTTTCCTATGAAGAACTTGCCAGAGTAACTAATAACTTTgcaagagaaaacaaaattggACAGGGAGGTTTTGGGGCAGTCTATAGGGGATTTATAAGAGACCTGAACGCCCACGTTGCCATTAAGAAGGTATCTCGCGGATCTAGACAAGGGGTGAAGGAGTATGCATCAGAAGTAAAGATCATTAGTCAACTGAGGCATAAAAATTTGGTTCAACTCTTCGGGTGGTGCCATCAGCATAATGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTTAAAGGAAAAGGCCTGCTAATATGGAAAGTTAGATATGATATTGCTAGAGGCCTGGCCTCAGCATTATTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTGCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCTAATTTTAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGGGATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGATATTTGCCTCCTGAAGCTGCCACAAGAGGCAAGGCTAGTAGGGAGTCTGATGTGTACAGTTTTGGAGTTGTTGCTTTGGAGATAGCCTGTGGTAGAAAGGCAATTGAACCTAATCTGAATGAAGAACAGATCTATTTGGTGGATTGGGTTTGGGAACTCCATGACGTGGGTGATCTCCTTAAAGCATCTGATCCAAGCTTATATGGACACTTTGATGAGAAGGAAATGGAGAGGTTAATGATAGTTGGCCTTTGGTGTACACACGGAGATTTCCTTCTGAGGCCTACAATTAGGCAAGCTGTTCAGGTGCTTAATTTTGAAGCTCCATTGCCCACTCTCACACCACGGGTGCCAGCCTCTACCTATAATACATCTTTCAGGTCTATTCCCTCTAGGACTCCTGCTTTTGCAAATAACCAACCTGTGTCTTCAACTTCAAGCAGTAGCTTATTCACTGGGTCCTCACAATCGAGCAAAACTCTTGAAGTCATTTCTCCAGCAGCTGCGCTTTTACATACGTACTAA 1152 0.4167 MLRNRGMEEEDVSLFDHAMDNDFERMSLPKKFSYEELARVTNNFARENKIGQGGFGAVYRGFIRDLNAHVAIKKVSRGSRQGVKEYASEVKIISQLRHKNLVQLFGWCHQHNDLLLIYEFMENGSLDSYLFKGKGLLIWKVRYDIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNAKLGDFGLARLMDHGIGSKTTVLAGTIGYLPPEAATRGKASRESDVYSFGVVALEIACGRKAIEPNLNEEQIYLVDWVWELHDVGDLLKASDPSLYGHFDEKEMERLMIVGLWCTHGDFLLRPTIRQAVQVLNFEAPLPTLTPRVPASTYNTSFRSIPSRTPAFANNQPVSSTSSSSLFTGSSQSSKTLEVISPAAALLHTY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1863 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Ssu5g1863 383 ProSiteProfiles Protein kinase domain profile. 44 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1863 383 SUPERFAMILY Protein kinase-like (PK-like) 28 336 IPR011009 -
Ssu5g1863 383 Gene3D Phosphorylase Kinase; domain 1 29 120 - -
Ssu5g1863 383 ProSitePatterns Protein kinases ATP-binding region signature. 50 74 IPR017441 GO:0005524
Ssu5g1863 383 MobiDBLite consensus disorder prediction 341 363 - -
Ssu5g1863 383 CDD STKc_IRAK 50 314 - -
Ssu5g1863 383 Gene3D Transferase(Phosphotransferase) domain 1 121 334 - -
Ssu5g1863 383 SMART serkin_6 44 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1863 383 PANTHER - 1 381 - -
Ssu5g1863 383 Pfam Protein kinase domain 45 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1863 383 PANTHER LECTIN RECEPTOR KINASE 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1863 Ssu-Chr5 55239121 55240272 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1863 3 332 Receptor kinase-like Gene Family AT5G10530 57.357 3.30e-134 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu5g1863 Pkinase 5.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1863 - - gmx:100783420 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1863 5 55239121 55240272 Ssu5g1863 5 55239121 55240272 ECH
Ssu5g1863 5 55239121 55240272 Ssu1g0254 1 5934583 5936628 PCT