Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1860 ATGGTATCAGCAGCACCAAAAGCAATGTATGTCCAGTTACCCAATCTTAATTTCCCCATTCACTTCGTAGTGATGTTGTTATCCATTTTCTTCCTCTTGATTATCCCATATGCTTCCCCTCTATCCTTTAACTTTACTAGTTTCGATCCAAATGACAAGAGCATAATATATGAGGGATCAGCAAACCCTGTAGCACCAACTATCCAACTCACAACAAACCAAGTGGACAAGGGCATGATTGGAAGCATTGGTCGAGCCACATATTACCAACCTATGCACCTGTGGGACAAAGCCACGGGGAATCTCACAGATTTCACAacccatttttcttttgtcataGATTCACAGAACCGAAATAAATATGGAGATGGGATTGCTTTCTTCCTTGCCCCTGTTGGTTCAAAGCTTCCTAATGTCACAAAAGGAGGTTCTATGGGTCTGACACTTGACAACCAACCATTGAACTCCACTGACAATCCATTTGTTGCTGTGGAGTTTGATATCTATCAGAATAACTGGGATCCACCCCATGAACATGTTGGAATCGACATCAACTCTATGAGATCAGTTGCTAATGTGACATGGTTGGCTGATATCAAGGAAGGGAAACTCAATGAGGCTTGGATCAATTACAATTCTAGTtcattaaatttgagtgttGTGTTCACAGGTTTTACCAATGATACCAATCATTCCATTCAGCAGCAACATCTATCTGCCATAGTTGATCTGAGACGTTATTTACCAGAATTGGTTACTTTTGGCTTCTCAGCTGCCACGGGAAATGCAACTGCTATACATAGTCTCAGTTCATGGGATTTTAGCTCAACTTTGGCAGCACAAGAAAACACAACAAACGGAGGATACCCAGTTGCAAGGTCTCCAACCTCCAATATGGCTCCCAGTAAGAAGAAACAGAACAAGACAGGCTTAGCAGTGGGGTTGAGTATCGGTGGATTTGTTTTGATTGGTGGGTTGGGTTTGATTTCAATTGGCTTGTGGAAGAAGTGGAAGAAACGAAGTGAAGAGGAAGATCATGATTTTGAAGAGTATATGGGTGAGGATTTTGGAAGGGGGGCAGGACCCCGGAAGTATTCATATGCTGAATTAGCACAAGCAGCTAATGGTTTCAAAGATGAGCACAAGCTAGGACAGGGAGGATTTGGAGGTGTTTATAGGGGTTATCTGAAAGACATAAAGTCTCATGTTGCTATTAAGAGGGTGTCAGAAGATTCTGATCAAGGGATAAAGGAGTTTGCATCAGAAGTAAGAACTATTAGCCGGTTGAGGCACCGAAATCTAGTGCACTTGATTGGTTGGTGTCATGAAAGGAAAAAGCTCTTGCTCGTGTATGAGTACATGCCAAATGGAAGCTTAGATATTCATCTTTTCAAGAAGCAAAGCTTGTTGAAATGGGCGGTGAGATATAACATAGCTCGAGGTTTGGCCTCCGCATTGCTATACTTGCATGAAGAATGGGAACAATGTGTTGTGCATAGAGACATAAAGTCAAGCAACATTATGCTGGATTCAGAGTTTAATGCCAAACTTGGGGATTTTGGTTTAGCAAGGTTTGTGGACCATGCAAAAGGTGCACAAACTACAGCTTTAGCTGGGACTATGGGCTACATGGCTCCTGAATGTGCTACCTCGGGCCGGGCTAGTAGGAATCAGATGTCTACAGCTTTGGAGTTGTTGCTTTAG 1704 0.4184 MVSAAPKAMYVQLPNLNFPIHFVVMLLSIFFLLIIPYASPLSFNFTSFDPNDKSIIYEGSANPVAPTIQLTTNQVDKGMIGSIGRATYYQPMHLWDKATGNLTDFTTHFSFVIDSQNRNKYGDGIAFFLAPVGSKLPNVTKGGSMGLTLDNQPLNSTDNPFVAVEFDIYQNNWDPPHEHVGIDINSMRSVANVTWLADIKEGKLNEAWINYNSSSLNLSVVFTGFTNDTNHSIQQQHLSAIVDLRRYLPELVTFGFSAATGNATAIHSLSSWDFSSTLAAQENTTNGGYPVARSPTSNMAPSKKKQNKTGLAVGLSIGGFVLIGGLGLISIGLWKKWKKRSEEEDHDFEEYMGEDFGRGAGPRKYSYAELAQAANGFKDEHKLGQGGFGGVYRGYLKDIKSHVAIKRVSEDSDQGIKEFASEVRTISRLRHRNLVHLIGWCHERKKLLLVYEYMPNGSLDIHLFKKQSLLKWAVRYNIARGLASALLYLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARFVDHAKGAQTTALAGTMGYMAPECATSGRASRNQMSTALELLL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1860 567 Pfam Protein kinase domain 377 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1860 567 SUPERFAMILY Protein kinase-like (PK-like) 361 555 IPR011009 -
Ssu5g1860 567 CDD lectin_legume_LecRK_Arcelin_ConA 41 278 IPR001220 GO:0030246
Ssu5g1860 567 Gene3D Phosphorylase Kinase; domain 1 362 453 - -
Ssu5g1860 567 SMART serkin_6 377 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1860 567 ProSitePatterns Protein kinases ATP-binding region signature. 383 406 IPR017441 GO:0005524
Ssu5g1860 567 PANTHER RECEPTOR LECTIN KINASE 25 557 - -
Ssu5g1860 567 Gene3D - 39 289 - -
Ssu5g1860 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Ssu5g1860 567 Gene3D Transferase(Phosphotransferase) domain 1 454 559 - -
Ssu5g1860 567 ProSiteProfiles Protein kinase domain profile. 377 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1860 567 PANTHER - 25 557 - -
Ssu5g1860 567 Pfam Legume lectin domain 41 284 IPR001220 GO:0030246
Ssu5g1860 567 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 282 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1860 Ssu-Chr5 55231377 55233080 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1860 24 556 Receptor kinase-like Gene Family AT5G10530 46.140 2.61e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu5g1860 Lectin_legB 5e-72 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1860 - - gsj:114419429 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0254 1 5934583 5936628 Ssu5g1860 5 55231377 55233080 PCT