Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1859 ATGGAAAATGGCAGCTTAGATTCTCACCTTTTTCACGGAGAAAGCATCTTGTCATGGCAGGTGAGGTACAACATAGCTATGGGCTTGGCCTCAGCATTGCTTTACCTACAAGAAGAATGGGAAAAATGTGTGCTATGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAACCCTAAGCTTGGGGATTTCGGCCTGGCTAGGCTGGTTGATCATGAGAAAGGGTCACAAACCACAGGTGTGGCAGGGACCATGGGTTACATTGCCCCTGAATATATGAACACAGGCAAGGCTCGAAAGGAATCTGAGATATTCAGTTTGGGGGTTGTTCTGTTGGAGGTAGCCACTGGAAGAAAAGCCATTCACCACACATGA 381 0.4646 MENGSLDSHLFHGESILSWQVRYNIAMGLASALLYLQEEWEKCVLWDIKSSNIMLDSNFNPKLGDFGLARLVDHEKGSQTTGVAGTMGYIAPEYMNTGKARKESEIFSLGVVLLEVATGRKAIHHT 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1859 126 Pfam Protein kinase domain 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1859 126 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1859 126 PANTHER - 1 123 - -
Ssu5g1859 126 SUPERFAMILY Protein kinase-like (PK-like) 1 123 IPR011009 -
Ssu5g1859 126 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Ssu5g1859 126 PANTHER GPCR KINASE-RELATED 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1859 Ssu-Chr5 55196348 55196728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1859 1 123 Receptor kinase-like Gene Family AT5G10530 67.742 5.90e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu5g1859 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1859 - - cam:101492002 207.608