Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1858 ATGGATCAATTACCAGAGTCGGTTATTGTTGGCATATCAGCTGCAACAGGAGGATATGCTGAGGAACATACCCTGCTGTCATGGTCATTTAGTACAAGCCCACCAAGTAAGGTCGATCTTGATCCACGTATGGTCGATCCAGAGAAGGAAAGCATCACAAAATTGTTGGAGGGAGTAGGAATTGGTACAGGTTTGTTTTTGAGTTTATTAGGAATGGTCCACATTATATCGAGGCTAGCCAAAGGAAAAGAGGAAGAACGCACTTCAGAAGCCACTTCTGATCTGAAGATGGATAATGAATTCCAAATGAGCAGTGGACCGAAAAAGATTGGTTATTATGAATTGGCAACTGCAACTAACAACTTTGAAGAGACACAGAAGCTTGGCCAAGGGGGTTTCGGTGGTGTTTATAAAGGGTATTTCAAAGACTCAAACACCTATGCCGCCATAAAGAGGATATCAGCAGATTCAAGACAGGGTATAAAACAATACGCAGCAGAAGTGGAGATCATTAGCCAATTGAGGCACAGGAATTTGGTAAAACTCACTGGATGGTGCCATAAGAAGAATGATCTCCTCCTGATATGA 588 0.4235 MDQLPESVIVGISAATGGYAEEHTLLSWSFSTSPPSKVDLDPRMVDPEKESITKLLEGVGIGTGLFLSLLGMVHIISRLAKGKEEERTSEATSDLKMDNEFQMSSGPKKIGYYELATATNNFEETQKLGQGGFGGVYKGYFKDSNTYAAIKRISADSRQGIKQYAAEVEIISQLRHRNLVKLTGWCHKKNDLLLI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1858 195 ProSiteProfiles Protein kinase domain profile. 122 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1858 195 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Ssu5g1858 195 Pfam Protein kinase domain 122 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1858 195 PANTHER - 2 195 - -
Ssu5g1858 195 Pfam Legume lectin domain 4 37 IPR001220 GO:0030246
Ssu5g1858 195 ProSiteProfiles L-type lectin-like (leguminous) domain profile. 1 33 IPR005052 GO:0016020
Ssu5g1858 195 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 35 IPR013320 -
Ssu5g1858 195 PANTHER LECTIN RECEPTOR KINASE 2 195 - -
Ssu5g1858 195 Gene3D - 1 40 - -
Ssu5g1858 195 Gene3D Phosphorylase Kinase; domain 1 107 195 - -
Ssu5g1858 195 SUPERFAMILY Protein kinase-like (PK-like) 96 195 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1858 Ssu-Chr5 55195756 55196343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1858 4 195 Receptor kinase-like Gene Family AT5G10530 39.896 5.02e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu5g1858 Pkinase 3.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1858 - - lja:Lj4g3v0408370.1 251.136