Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1855 ATGGGGAGAGGAAAGATTGATATTCGAAGAATCGAAAATTCGACAAGCCGGCAAGTGACTTTCTGTAAGAGAAGAAATGGGTTACTGAAGAAAACTAGAGAACTAtctattctctgtgatgcagaAGTTGGACTGATTGTGTTTTCCTGCACGGGCAAGCTTTACGAATATTCAAGCACCAGCATGAAATCAATCATTGAGCGCTTTAACAGGCAAAAGGAGGACCATCATCGGCTAATGGATCCTGCTTCAGCGGTCAAGAGAGAAGCAGCAAGCTTGAGGCAACAACTGCAGCATTTGCAAGAATGCCACAGGCAACTGATGGGTGAAGAACTTTCTGGTTTGGGTTTAAATCAACTTAAGCATCTGGAAAATCAACTACAAATGAGTTTGAAGAACGTTCGCATAAAAAAGGATCAACTTTTTAGAGATGAGATCAAAGAATTACAGCAAAAGGGAAGACTCATTCAACAAGAAAATGAACAACTACTTAAGAAGAAAAACCTTATCCATAAAGAAAATGCAGAACTACAGAAGGTTATTGAAGCAAGGCGTACGAAAGAAGAAAACGCAACGCTCAACCCACCTCATGCTATCAGCAATGGATATGACATACTTCACCCTATCAGTCTGCATCAAAGCCAGCCTCAGCCTCAGCCTCAACACGGTGAACCACCAGGGGAAGTGATGATTCTGGGGTATTCCCTCAAATTGATGatgtaa 723 0.4039 MGRGKIDIRRIENSTSRQVTFCKRRNGLLKKTRELSILCDAEVGLIVFSCTGKLYEYSSTSMKSIIERFNRQKEDHHRLMDPASAVKREAASLRQQLQHLQECHRQLMGEELSGLGLNQLKHLENQLQMSLKNVRIKKDQLFRDEIKELQQKGRLIQQENEQLLKKKNLIHKENAELQKVIEARRTKEENATLNPPHAISNGYDILHPISLHQSQPQPQPQHGEPPGEVMILGYSLKLMM 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1855 240 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Ssu5g1855 240 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Ssu5g1855 240 Pfam K-box region 85 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g1855 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 240 - -
Ssu5g1855 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu5g1855 240 Coils Coil 146 190 - -
Ssu5g1855 240 Coils Coil 83 110 - -
Ssu5g1855 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu5g1855 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu5g1855 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 240 - -
Ssu5g1855 240 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g1855 240 Coils Coil 120 140 - -
Ssu5g1855 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu5g1855 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu5g1855 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu5g1855 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Ssu5g1855 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1855 Ssu-Chr5 55046044 55086359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1855 1 221 MADS-box Gene Family AT2G14210 58.850 1.08e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu5g1855 K-box 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1855 K09264 - gmx:100779119 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1855 5 55046044 55086359 Ssu1g0262 1 6100728 6121607 PCT