Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1848 ATGGAGAACTATCAGTACCCGTCGTACCCCGACTCCGGCGACTCCTCGCCGCGGTCGCGGGAAATCGACTTCGAGAACCCGGCGCCGTGGGACGAGCAGCAGAGCCAGAACTACAGAGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCGCGCACCCACGACAACCAGCTCTCCTACGTCGGCGGCGACACGAAAATCCTCGCCGTCGACCGCACCATCAAGTTCCCGGCGTTCCTCGCGAAGCTGGCCGCGATCTGCGACGCCACGCCGCAGGACCTCACCTTCAAGTACCAGCTCCCCGGCGAGGACCTCGACGCGCTCATCTCCGTCACCAACGACGACGACCTCGAGCACATGATGCACGAGTACGACCGCCTCTACCGCCCCAGCGCCAAACCCGTGAGAATGAGACTCTTCCTCTTCACGCTTTCCACAAACCCTAGCCCCTCTTTCTCCACCGATCGCGATCGCTTCGTCGAGGCTCTCAATTCGGGTCCCATCGCTCCGCAACCCGATCCGGTTAAGAACCCGCCCGTTGTTCCGCCTCCCAACGTTGACTATTTATTCGGCCTCGATAAGGCCGTTGCTCCTCCGCCTCACGCTCCTTCCTTCGCCGCCGTTAAGTTCCATGATCCCGTGCCGGAGCCTGTTGCTCCGCCGCCGGAGTATCAATCTCGCGGCGGAGTTTCCCTTTCCGATCGGGTTGGCGGACCGGATCCGAATGTGAATTCGATTGAAATTCAGAGACAGTTGCAGCAGGAGATGCAGCGTTTGCAAATTGCTGAGAGTGAATATCGTAGGAGGAGTGAGGATGGATATGGAGGAGGAGGTTACGCTGCTCCGGGAGCGGATTATTACGTGCAGAAGGTGCCGGAGAAGGTTCCGCCGCCGGCTAGTGCCCCGCCTCCGGCGGGGGTACTGGCAGGAGAAGCAGTTTTCCGGCGAGGGTTATCAGACGACGATGACGACGGCTCCCGGAGGAGGCGATCAGCCGGTTTATGTTTTTCCGGCGCCTGGGACGTTCTACCACGCGCCGGTGATGCGGCAGCCGGCGGCGCAGGGGTACTACGCGGTGCAGAGAGTGAGTTCCGAGGGTTACCGCGAGCAGCCGGTGTACGGCGGCGCGCCGCAGCAGAAAACGGCGTTTTCGTCGGCGGGGCCGGCGCCGCCGGTTAA 1182 0.6218 MENYQYPSYPDSGDSSPRSREIDFENPAPWDEQQSQNYRAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRTIKFPAFLAKLAAICDATPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPSAKPVRMRLFLFTLSTNPSPSFSTDRDRFVEALNSGPIAPQPDPVKNPPVVPPPNVDYLFGLDKAVAPPPHAPSFAAVKFHDPVPEPVAPPPEYQSRGGVSLSDRVGGPDPNVNSIEIQRQLQQEMQRLQIAESEYRRRSEDGYGGGGYAAPGADYYVQKVPEKVPPPASAPPPAGVLAGEAVFRRGLSDDDDDGSRRRRSAGLCFSGAWDVLPRAGDAAAGGAGVLRGAESEFRGLPRAAGVRRRAAAENGVFVGGAGAAG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1848 393 CDD PB1_UP2 43 143 - -
Ssu5g1848 393 SMART PB1_new 54 145 IPR000270 GO:0005515
Ssu5g1848 393 Pfam PB1 domain 55 143 IPR000270 GO:0005515
Ssu5g1848 393 SUPERFAMILY CAD & PB1 domains 55 151 - -
Ssu5g1848 393 Coils Coil 246 270 - -
Ssu5g1848 393 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g1848 393 MobiDBLite consensus disorder prediction 1 31 - -
Ssu5g1848 393 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 305 - -
Ssu5g1848 393 Gene3D - 60 144 - -
Ssu5g1848 393 PANTHER OS05G0427100 PROTEIN-RELATED 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1848 Ssu-Chr5 54923278 54924459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1848 38 166 MAP Kinase Kinase Kinase AT5G57610 41.176 4.52e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1848 - - gmx:100820420 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1848 5 54923278 54924459 Ssu1g0274 1 6599124 6600449 PCT