Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1843 ATGAGCACTACCACTATGTTGGAGTCTTTAGCTTGGTGCCAAAGCTTTAAGGGATATGACCTTACCAAACAAAAGAGTCCGGGTTTCTCTCATGCTATTTCACGAGTTTATAGAAATTCTATTTTCATGCTATATTCAGTTAACAAGCAAGTGCCACTACTACCACACGGTGCTAGTCATGGAGTATTTCATAGGACTTCTGTGTCAGAAAATTTCTTTAGAAGATCTCCTCTCAATGTTCCACGTTCTGGTTGGAAAGGATTGTATAGGCCACGTTGGGAACGGCTACAAACAAATGTAGCATATGATGTTGCTGGTGCTACTGAAGTCATCAATGATTTAGGATTGGATACTCTTACTTTCTTGGCTGTGACCGTCTTAATTGTGCCTACATTCAAGTCACTTAAAGCCAGTCCTATACTTGGTTTCTTCTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCAGAATGGGGGATCCTTTTCTTGcTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGGCTCAGGTTGTACTGTCTACTCTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGaactaaaattttggaattcCTTTTCCATTCTAGGCCTGATCTGGTGAACATCAGAAGTGTTGATGAAGCTGTAGTGATTGGTGCtgctctctctctttcatcTTCTGCATTTGTTCTACAgcTTCTTGCAGAGAAAGGTGAGCTTCCTACAAGATTTGGTTCAGCAACTCTTGGAATACTTCTTTTGCAGGACTTAGCTGTTGTCCCTCTTTTAGTCATACTTCCAATACTAGAGAGCCAGaaTATATCTGAGGAAAGTATTTGGCCCATGCTTGCTCAAGAAAGTTTAAAGGCATTAGGTGGATTGGGTCTGCTTTCTCTTGGGGCAAAGTACATTCTCAGAAGAGTTTTTGAGGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACAATTGCTGTGACTTCGCTAGGCACGCAGAATTTGGGCTTTAGTGATACACTTGGAGCTTTTTAG 1131 0.3979 MSTTTMLESLAWCQSFKGYDLTKQKSPGFSHAISRVYRNSIFMLYSVNKQVPLLPHGASHGVFHRTSVSENFFRRSPLNVPRSGWKGLYRPRWERLQTNVAYDVAGATEVINDLGLDTLTFLAVTVLIVPTFKSLKASPILGFFCAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMGLAQVVLSTLAFTAFELPPNGAVGTKILEFLFHSRPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDLAVVPLLVILPILESQNISEESIWPMLAQESLKALGGLGLLSLGAKYILRRVFEVVADTRSSEAFVALCLLTIAVTSLGTQNLGFSDTLGAF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1843 376 Gene3D - 113 376 IPR038770 -
Ssu5g1843 376 Pfam Sodium/hydrogen exchanger family 120 376 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu5g1843 376 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 89 376 - -
Ssu5g1843 376 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 89 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1843 Ssu-Chr5 54868933 54875155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1843 1 376 Inorganic Solute Cotransporters AT4G04850 69.634 7.25e-164 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1843 - - gmx:100798214 664.455